Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2029 ATGGGTGATGATGATTTCTTCAATAATCAAATCCACATGATCTCTTTCACCGAAGAAAAGTCCTCCAAAGACATGATTTTTCAACAAGCATTTTTCTCCTCATCTTCTTCCTCTTCTTCCCTTCAAAGCAACTTGAAACCTTGCTCACCATTTCCAACGGGTGGTTACGTTTTGTCTTTTGATAAACCTGTTGTTGAACCACTTTACCCTAAAAAACATCACTCTCCTAAAAGCCTAGCACAAAGCCAATATTGTGTTGAACCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCTGAGAGAAAAAGGAGAGAGGAATTGACTAAGAGCATCGTAGCACTTTCAGCCACCATTCCTGGGTTAAAGAAGACAGACAAGGTCAATGTAGTGCGTGAAGCTGTCAGTTATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTAGAAAATCAAAAGAGAAAGGAAAGTATGAATTCAATAATACTCAACAAGCACAGGCCACTCTCCATAAATGATCAAGCCACTCATGGATTTGTGGATGTGAATGAAGAACTCCTCGAGGTGAAAGTCACTGTTTTAGACAAGGAAGTGCTCATTGGAATTTATTGTGAGAAACAGAGGCAGAGATTGCTCAAAATATTGTCATTGCTTGATAATCTCCATCTTTCTATCACCCATACCAGCGTATTGCCATTTGGAACTTCCACTCTTAAAATTACCATCATCGCTCAGATGAATAACGAATATAATATGACAATTGATGATCTAGTAAAAACACTGCGGCAACGCATATTGAAGTCACAGGATATGCAAAAGTGA 825 0.3939 MGDDDFFNNQIHMISFTEEKSSKDMIFQQAFFSSSSSSSSLQSNLKPCSPFPTGGYVLSFDKPVVEPLYPKKHHSPKSLAQSQYCVEPKAFPRTRPRVHILAERKRREELTKSIVALSATIPGLKKTDKVNVVREAVSYVKQLQERVKELENQKRKESMNSIILNKHRPLSINDQATHGFVDVNEELLEVKVTVLDKEVLIGIYCEKQRQRLLKILSLLDNLHLSITHTSVLPFGTSTLKITIIAQMNNEYNMTIDDLVKTLRQRILKSQDMQK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2029 274 Coils Coil 133 160 - -
Gso9g2029 274 PANTHER BHLH TRANSCRIPTION FACTOR 2 273 - -
Gso9g2029 274 Gene3D - 89 160 IPR036638 GO:0046983
Gso9g2029 274 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 273 - -
Gso9g2029 274 Pfam Helix-loop-helix DNA-binding domain 98 144 IPR011598 GO:0046983
Gso9g2029 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 143 IPR011598 GO:0046983
Gso9g2029 274 SMART finulus 100 149 IPR011598 GO:0046983
Gso9g2029 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 159 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2029 Gso-Chr9 44711659 44715952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2029 99 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.674 5.83e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g2029 HLH 4.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2029 - - gmx:100808355 523.857