Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2020 ATGGCCGGCATAGACTTGGGTTCAGCATCACATTTTGTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGAGAACCAACAAGACCAAGACAACAACCTTAACGATCACGAAGGGCTTGACCTAATTACACCAAATCCAGGTCCTGGTGATGTTGTTGGTCGCAGGCCAAGAGGAAGACCCCCAGGTTCAAAGAACAAGCCAAAACCACCAGTTATCATCACAAGAGAGAGTGCAAACACCCTTAGGGCTCACATCCTTGAAGTTAGTACTGGTTGTGACGTCTTTGAATCGGTCGCTACCTATGCAAGGAAGCGGCAAAGAGGGATATGTGTCCTCAGTGGGAGTGGCACCGTGACCAACGTGACATTGAGGCAGCCGGCCGTGGCTGGTGCCGTCGTCACGCTGCACGGAAGGTTTGAGATCCTCTCTTTGTCAGGATCATTCCTCCCACCTCCAGCTCCACCAGGTGCTACAAGTTTGACTGTGTTCCTTGGTGGAGGACAGGGTCAAGTGGTGGGAGGAAATGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAATGTAGCATATGAGAGGTTGCCTTTGGATGAAGATGAATCTATGCAGATGCAACAAGGGCAATCATCAGCTGGTGATGGTAGCGGTGACCATGGTGGTGGAGTTAGTAATAACTCTTTTCCGGATCCGTCTTCCGGGCTTCCATTCTTCAATTTGCCACTAAACATGCCTCAGTTACCTGTTGATTGTTGGGCTGGCAACTCTGGTGGAAGGCAATCTTACTGA 813 0.4957 MAGIDLGSASHFVHHRLQRPDLEDDENQQDQDNNLNDHEGLDLITPNPGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSTGCDVFESVATYARKRQRGICVLSGSGTVTNVTLRQPAVAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESMQMQQGQSSAGDGSGDHGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDCWAGNSGGRQSY* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2020 270 PIRSF ESCAROLA 3 265 IPR014476 GO:0003680
Gso9g2020 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Gso9g2020 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Gso9g2020 270 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Gso9g2020 270 MobiDBLite consensus disorder prediction 17 74 - -
Gso9g2020 270 CDD DUF296 84 159 IPR005175 -
Gso9g2020 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 270 - -
Gso9g2020 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 270 IPR014476 GO:0003680
Gso9g2020 270 MobiDBLite consensus disorder prediction 209 238 - -
Gso9g2020 270 MobiDBLite consensus disorder prediction 210 238 - -
Gso9g2020 270 Gene3D - 83 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2020 Gso-Chr9 44648485 44650607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2020 1 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.455 1.43e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2020 - - gmx:100814613 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1839 18 50916893 50918325 Gso9g2020 9 44648485 44650607 GST