Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso9g2013 | ATGCCTCCGAGAATAGTGAAGAGAGGTGCTGCGGCGAAGAGGGCATCGAGGGGATCCTCAAAGGCTGCTCCTGAGAATCAACCTGAGCCTGAAACTGCGGAAGTGGTCGTGAAAAATAATGAAGAAAATCCTGTTGTTGATGCTGTGGTGGAAGAAAAGCCCGTTGATGTGGAGCAAGAACATGAGGAAGTGCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGATTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTTGAGGATAATTATCCTGAGTATGAAGCAGAGGAATATGGTGGTGTTGACTATGATGAGAAGGGAATTGAACAAGATGAAGGTCAGGAGGAGGGAGATGAAGTCGAGGAAGATCCCGAAGAGATTGTAGGTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGAGCATGCTGGTGAGGAGCATGAGCATGCACAGATGCCTGATGTGGAGCAAGAGGAACACCGTGAAGTGGTAAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTATTTGTTGGTGGCCTAGATAAGGATGCTACTGAGCATGATCTGAAAAAGGTTTTCGGTAAAGTTGGGGTAGTTACTGAAGTCCGGCTGATGATAAATCCCCAGACAAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACGGTTGAGCAAGCGAGAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGCAAACGATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAACTTAAACATTATGGAGTAGAAGATGTGGAGGATTTGACTTTAATAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCTTCTCGTTCAGATGCTAAGGAAGCCTATAAGCGACTGCAGAAGAGAGATGTTGCATTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCCGACTCTTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCGCTGCCTCCTTCATGGAATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGAGAGATTGAAAAAGTTGAGCTTGCTAAGGACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGTTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGAAAATATGTTAATCATGGGGACTTCCGCTCTGGCCGCAATTCTGGAAGATTGGTAAGGTCTTCACGGAGTCAACCTGCACCACGTAGTCTTCCTGCCCGTGTGGTGAGAGGAGTTGGAAGTCGTGTTCCGCCAGTTAGACCTATTAGTGTGAGAAATAGACGTCCTGTCACACCCATGCTAGTAAGAGCCAGGCCAGTGGCTCCTCCAGCTAGAAGCTATGACAGGAGATTGGCTGCTCCTGCTTATCCCAAAAGTGGCATGAAAAGAGATTATAGTCGACGCGTGGATCTACCACCTCCAAGAAGTAGAGTTGCTACAGATTATGGCTCTAGAGTAGCCTCTCAGAGGCATTCATCTTACAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTGCATAGAAGTACATCTCGTGGTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGGCTCCTCCTTCTCCTCCTCCCCCCCATCTAAGTTACCATGAAGGACGGCCGCGTGATTATGATTCTCTATCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCTCGGTATGATACTGGTGCTCGCCAGTCAAGGTCTCGTTTAGATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGTCTTGGATACAGTGGCAGCAGAAATTCTATTTCTAATCAAGATTTACATGGGACTTATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACTCATCAAGTTATGGTGGTGATTATGCATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCTATGTATTCTGGTAGAGGTGTGGGTGGTAGCAGCAATTATATGGGTAGTGGTGGATCTGGGTCTTATTATTGA | 2334 | 0.4473 | MPPRIVKRGAAAKRASRGSSKAAPENQPEPETAEVVVKNNEENPVVDAVVEEKPVDVEQEHEEVPNGSAKVENNEEEIKESIDEYEKDEHLDFEDNYPEYEAEEYGGVDYDEKGIEQDEGQEEGDEVEEDPEEIVGEEEGDTGDEEVEYVYEEVEDDDDEHAGEEHEHAQMPDVEQEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKYVNHGDFRSGRNSGRLVRSSRSQPAPRSLPARVVRGVGSRVPPVRPISVRNRRPVTPMLVRARPVAPPARSYDRRLAAPAYPKSGMKRDYSRRVDLPPPRSRVATDYGSRVASQRHSSYRDYPARGSDYPELHRSTSRGAPKRGYVDDGYGQRFERAPPSPPPPHLSYHEGRPRDYDSLSGSKRPYTAIDDVPPRYDTGARQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISNQDLHGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYASRGSDVGGRSYSSMYSGRGVGGSSNYMGSGGSGSYY* | 778 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 527 | 674 | - | - | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 1 | 180 | - | - | |
Gso9g2013 | 777 | SUPERFAMILY | RNA-binding domain, RBD | 187 | 270 | IPR035979 | GO:0003676 | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 747 | 777 | - | - | |
Gso9g2013 | 777 | CDD | RRM_SF | 194 | 265 | - | - | |
Gso9g2013 | 777 | Gene3D | - | 359 | 484 | IPR012677 | - | |
Gso9g2013 | 777 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 369 | 451 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | SMART | rrm1_1 | 193 | 266 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | SMART | rrm1_1 | 370 | 445 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | SMART | rrm1_1 | 273 | 352 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 45 | 77 | - | - | |
Gso9g2013 | 777 | Gene3D | - | 137 | 267 | IPR012677 | - | |
Gso9g2013 | 777 | Coils | Coil | 68 | 91 | - | - | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 454 | 491 | - | - | |
Gso9g2013 | 777 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 356 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 737 | 777 | - | - | |
Gso9g2013 | 777 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 1 | 777 | - | - | |
Gso9g2013 | 777 | CDD | RRM_SF | 371 | 426 | - | - | |
Gso9g2013 | 777 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 340 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 194 | 262 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 371 | 428 | IPR000504 | GO:0003723 | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 588 | 603 | - | - | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 163 | 180 | - | - | |
Gso9g2013 | 777 | SUPERFAMILY | RNA-binding domain, RBD | 271 | 428 | IPR035979 | GO:0003676 | |
Gso9g2013 | 777 | Gene3D | - | 272 | 355 | IPR012677 | - | |
Gso9g2013 | 777 | PANTHER | RNA RECOGNITION MOTIF | 1 | 777 | - | - | |
Gso9g2013 | 777 | MobiDBLite | consensus disorder prediction | 115 | 162 | - | - | |
Gso9g2013 | 777 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 270 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso9g2013 | Gso-Chr9 | 44593783 | 44600461 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso9g2013 | 194 | 468 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 20.861 | 6.16e-10 | 60.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso9g2013 | - | - | gmx:100811387 | 1261.13 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g1830 | 18 | 50852722 | 50859003 | Gso9g2013 | 9 | 44593783 | 44600461 | GST | |
Gso3g0914 | 3 | 32735682 | 32742358 | Gso9g2013 | 9 | 44593783 | 44600461 | PCT |