Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2013 ATGCCTCCGAGAATAGTGAAGAGAGGTGCTGCGGCGAAGAGGGCATCGAGGGGATCCTCAAAGGCTGCTCCTGAGAATCAACCTGAGCCTGAAACTGCGGAAGTGGTCGTGAAAAATAATGAAGAAAATCCTGTTGTTGATGCTGTGGTGGAAGAAAAGCCCGTTGATGTGGAGCAAGAACATGAGGAAGTGCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGATTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTTGAGGATAATTATCCTGAGTATGAAGCAGAGGAATATGGTGGTGTTGACTATGATGAGAAGGGAATTGAACAAGATGAAGGTCAGGAGGAGGGAGATGAAGTCGAGGAAGATCCCGAAGAGATTGTAGGTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGAGCATGCTGGTGAGGAGCATGAGCATGCACAGATGCCTGATGTGGAGCAAGAGGAACACCGTGAAGTGGTAAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTATTTGTTGGTGGCCTAGATAAGGATGCTACTGAGCATGATCTGAAAAAGGTTTTCGGTAAAGTTGGGGTAGTTACTGAAGTCCGGCTGATGATAAATCCCCAGACAAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACGGTTGAGCAAGCGAGAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGCAAACGATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAACTTAAACATTATGGAGTAGAAGATGTGGAGGATTTGACTTTAATAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCTTCTCGTTCAGATGCTAAGGAAGCCTATAAGCGACTGCAGAAGAGAGATGTTGCATTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCCGACTCTTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCGCTGCCTCCTTCATGGAATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGAGAGATTGAAAAAGTTGAGCTTGCTAAGGACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGTTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGAAAATATGTTAATCATGGGGACTTCCGCTCTGGCCGCAATTCTGGAAGATTGGTAAGGTCTTCACGGAGTCAACCTGCACCACGTAGTCTTCCTGCCCGTGTGGTGAGAGGAGTTGGAAGTCGTGTTCCGCCAGTTAGACCTATTAGTGTGAGAAATAGACGTCCTGTCACACCCATGCTAGTAAGAGCCAGGCCAGTGGCTCCTCCAGCTAGAAGCTATGACAGGAGATTGGCTGCTCCTGCTTATCCCAAAAGTGGCATGAAAAGAGATTATAGTCGACGCGTGGATCTACCACCTCCAAGAAGTAGAGTTGCTACAGATTATGGCTCTAGAGTAGCCTCTCAGAGGCATTCATCTTACAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTGCATAGAAGTACATCTCGTGGTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGGCTCCTCCTTCTCCTCCTCCCCCCCATCTAAGTTACCATGAAGGACGGCCGCGTGATTATGATTCTCTATCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCTCGGTATGATACTGGTGCTCGCCAGTCAAGGTCTCGTTTAGATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGTCTTGGATACAGTGGCAGCAGAAATTCTATTTCTAATCAAGATTTACATGGGACTTATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACTCATCAAGTTATGGTGGTGATTATGCATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCTATGTATTCTGGTAGAGGTGTGGGTGGTAGCAGCAATTATATGGGTAGTGGTGGATCTGGGTCTTATTATTGA 2334 0.4473 MPPRIVKRGAAAKRASRGSSKAAPENQPEPETAEVVVKNNEENPVVDAVVEEKPVDVEQEHEEVPNGSAKVENNEEEIKESIDEYEKDEHLDFEDNYPEYEAEEYGGVDYDEKGIEQDEGQEEGDEVEEDPEEIVGEEEGDTGDEEVEYVYEEVEDDDDEHAGEEHEHAQMPDVEQEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKYVNHGDFRSGRNSGRLVRSSRSQPAPRSLPARVVRGVGSRVPPVRPISVRNRRPVTPMLVRARPVAPPARSYDRRLAAPAYPKSGMKRDYSRRVDLPPPRSRVATDYGSRVASQRHSSYRDYPARGSDYPELHRSTSRGAPKRGYVDDGYGQRFERAPPSPPPPHLSYHEGRPRDYDSLSGSKRPYTAIDDVPPRYDTGARQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISNQDLHGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYASRGSDVGGRSYSSMYSGRGVGGSSNYMGSGGSGSYY* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2013 777 MobiDBLite consensus disorder prediction 527 674 - -
Gso9g2013 777 MobiDBLite consensus disorder prediction 1 180 - -
Gso9g2013 777 SUPERFAMILY RNA-binding domain, RBD 187 270 IPR035979 GO:0003676
Gso9g2013 777 MobiDBLite consensus disorder prediction 747 777 - -
Gso9g2013 777 CDD RRM_SF 194 265 - -
Gso9g2013 777 Gene3D - 359 484 IPR012677 -
Gso9g2013 777 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 451 IPR000504 GO:0003723
Gso9g2013 777 SMART rrm1_1 193 266 IPR000504 GO:0003723
Gso9g2013 777 SMART rrm1_1 370 445 IPR000504 GO:0003723
Gso9g2013 777 SMART rrm1_1 273 352 IPR000504 GO:0003723
Gso9g2013 777 MobiDBLite consensus disorder prediction 45 77 - -
Gso9g2013 777 Gene3D - 137 267 IPR012677 -
Gso9g2013 777 Coils Coil 68 91 - -
Gso9g2013 777 MobiDBLite consensus disorder prediction 454 491 - -
Gso9g2013 777 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 356 IPR000504 GO:0003723
Gso9g2013 777 MobiDBLite consensus disorder prediction 737 777 - -
Gso9g2013 777 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 777 - -
Gso9g2013 777 CDD RRM_SF 371 426 - -
Gso9g2013 777 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 340 IPR000504 GO:0003723
Gso9g2013 777 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Gso9g2013 777 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 428 IPR000504 GO:0003723
Gso9g2013 777 MobiDBLite consensus disorder prediction 588 603 - -
Gso9g2013 777 MobiDBLite consensus disorder prediction 163 180 - -
Gso9g2013 777 SUPERFAMILY RNA-binding domain, RBD 271 428 IPR035979 GO:0003676
Gso9g2013 777 Gene3D - 272 355 IPR012677 -
Gso9g2013 777 PANTHER RNA RECOGNITION MOTIF 1 777 - -
Gso9g2013 777 MobiDBLite consensus disorder prediction 115 162 - -
Gso9g2013 777 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2013 Gso-Chr9 44593783 44600461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2013 194 468 Eukaryotic Initiation Factors Gene Family AT1G49760 20.861 6.16e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2013 - - gmx:100811387 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1830 18 50852722 50859003 Gso9g2013 9 44593783 44600461 GST
Gso3g0914 3 32735682 32742358 Gso9g2013 9 44593783 44600461 PCT