Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2001 ATGGTATCCATCAAGATTCTTTTCTCGTTTGTTTTGGTGTTTCTAGCACACTCTTCACCCCAATTTGCTTGTTTATCCAAAACCATTTCTTTGGCCTCTGCTGCCAGCATAGTTACTGCTCGTGATCAAGCTGCAGCTGAGAACGGTGAAGCAAACGCTCTGTTAAAATGGAAACACAGCTTCAACAACTACAGCCAAGATCTCTTGTCGACATGGAGAGGTAATAGTCCATGCAAATGGCAAGGAATTCGGTGTGACAATTCCAAGTCAGTCTCCGGCATAAATCTTGCATATTATGGACTGAAAGGTACATTTCACACCCTCAACTTCTCCTCTTTCCCTAACCTCCTCAGCCTAAATATCTACAACAACTCCTTTTATGGGACTATACCCCCACAAATTGGTAACATGTCCAAAGTAAATGTTTTGAATTTTTCTTTAAATTCTTTCCATGGTTCCATCCCTCAAGAAATGTGGTCACTAAGGAGTTTACATGCTCTTGATCTTTCCCAATGTCTTCAACTAAGTGGAGCAATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTAGACTTAAGTACCGCCAAATTTTCTGGCCACATTCCTCCAGAGATTGGGAAGTTGAACAAGTTGGGATTTCTGCGTATTGCAGAAAATAACCTTTTCGGTCACATTCCTCGAGAAATTGGAATGTTGACAAACCTTAAGCTTATTGATTTCTCAGCAAATTCTCTCTCTGGTACTATCCCTGAAACAATGAGTAACATGAGTAATTTAAATAAACTTTACCTTGCCAGTAACTCCCTTTTATCTGGGCCAATTCCTTCCTCCTTATGGAACATGTACAACTTGACATTGATCCACCTTTATGCCAATAACCTTTCTGGATCTATCCCTGCTTCCATAGAAAACTTGGCCAAACTAGAGGAACTTGCACTGGATAGCAACCAAATTTCGGGTTATATTCCAACCACAATTGGAAATTTGAAAAGACTCAACGACCTTGATTTATCCGAGAATAATTTCAGTGGCCATTTGCCACCTCAAATATGTTTGGGTGGGTCACTAGCATTCTTTGCTGCTTTTCACAACCATTTTACTGGTCCAGTGCCAAAAAGTTTGAAGAACTGCTCTAGTATTGTTAGACTCAGGCTAGAGGGAAACCAAATGGAAGGAGATATATCGCAAGATTTTGGTGTCTATCCAAATTTGGAATATATTGATTTGAGTGACAATAAATTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGCACTAATCTTGCTACCTTGAAGATATCCAACAATAATATTTCAGGTGGCATACCAATCGAGCTTGTTGAGGCAACCAAGCTTGGCAAGCTTCACCTTTGTTCAAATCGCTTGAACGGAAAGCTACCAAAAGAGCTATGGAAGCTAAAATCATTAGTTGAACTCAAGGTCAACAACAATCATCTTTCAGAAAACATTCCAACTGAAATAGGATTGTTGCAGAATCTTCAACAGTTGGATCTTGCAAAAAACGAGTTTAGTGGCACAATACCAAAACAAGTTTTGAAGTTACCCAATTTAATAGAATTGAATTTGAGCAATAATAAAATAAAAGGGAGCATTCCCTTTGAGTTTAGCCAATATCAGTCTCTTGAATCCCTTGATCTAAGTGGGAATTTATTGAGTGGAACAATACCAGGTAAGCTTGGAGAGGTGAAGCTATTGCAATGGTTGAATCTCTCTCGCAATAATCTTTCAGGAAGTATTCCATCCAGTTTTGGTGGCATGTCAAGTTTGATTTCGGTGAACATATCATACAACCAGTTAGAAGGGCCACTTCCAGATAATGAAGCCTTTCTTAGGGCTCCATTTGAATCGTTGAAAAATAACAAAGGCTTGTGTGGCAACGTCACTGGCTTGATGCTTTGCCAACCCAAAAGCATTAAAAAGAGGCAAAAGGGCATCCTACTGGTATTATTTCCTATCTTGGGTGCCCCTTTATTATGTGGGATGGGGGTTTCAATGTATATTCTTTATCTAAAAGCAAGAAAGAAAAGAGTCCAGGCTAAAGATAAGGCACAATCTGAAGAAGTGTTTTCCCTATGGAGCCATGATGGAAGAAATATGTTCGAAAATATCATTGAAGCTACCAACAATTTCAATGATGAGCTTCTCATTGGAGTCGGAGGACAAGGATCCGTTTACAAGGTTGAGTTGCGTCCATCTCAGGTTTATGCGGTGAAGAAACTTCATTTGCAACCAGATGAAGAGAAGCCCAATTTTAAAGCTTTTAAAAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAACATTATCAAGCTCTGTGGATTTTGCTCACATCCACGGTTCTCACTTTTGGTTTATAAGTTCTTGGAAGGAGGTAGCTTGGATCAAATACTAAGCAATGACGCAAAAGCAGCTGCATTTGACTGGAAAATGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTATATGCATCATGATTGCTCACCTCCAATAATTCATCGTGATATATCGAGCAAGAATGTTCTTTTGGATTCACAAAATGAAGCACTTATCTCTGATTTTGGGACAGCTAAGATTCTAAAGCCTGGTTCACACACTTGGACCACGTTTGCATACACCATTGGGTATGCAGCTCCAGAGCTTTCCCAGACTATGGAAGTGACTGAGAAATATGATGTATTCAGTTTTGGAGTTATTTGTCTAGAAATCATCATGGGGAAGCATCCAGGAGATCTCATTTCTTCATTGTTGTCTTCATCTTCAGCAACAATAACTGATAATTTGTTACTAATTGATGTGCTAGACCAAAGACCTCCTCAACCTCTAAATTCAGTTATTGGGGATATCATTTTGGTTGCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCAAGTTCTCGGCCAACCATGGATCAAGTGTCTAAAAATCTTATGATGGGAAAATCACCTTTAGCAGACCAGTTCCCTATGATTAGACTTGGACAACTTCTCTAA 3030 0.3941 MVSIKILFSFVLVFLAHSSPQFACLSKTISLASAASIVTARDQAAAENGEANALLKWKHSFNNYSQDLLSTWRGNSPCKWQGIRCDNSKSVSGINLAYYGLKGTFHTLNFSSFPNLLSLNIYNNSFYGTIPPQIGNMSKVNVLNFSLNSFHGSIPQEMWSLRSLHALDLSQCLQLSGAIPNSIANLSNLSYLDLSTAKFSGHIPPEIGKLNKLGFLRIAENNLFGHIPREIGMLTNLKLIDFSANSLSGTIPETMSNMSNLNKLYLASNSLLSGPIPSSLWNMYNLTLIHLYANNLSGSIPASIENLAKLEELALDSNQISGYIPTTIGNLKRLNDLDLSENNFSGHLPPQICLGGSLAFFAAFHNHFTGPVPKSLKNCSSIVRLRLEGNQMEGDISQDFGVYPNLEYIDLSDNKFYGQISPNWGKCTNLATLKISNNNISGGIPIELVEATKLGKLHLCSNRLNGKLPKELWKLKSLVELKVNNNHLSENIPTEIGLLQNLQQLDLAKNEFSGTIPKQVLKLPNLIELNLSNNKIKGSIPFEFSQYQSLESLDLSGNLLSGTIPGKLGEVKLLQWLNLSRNNLSGSIPSSFGGMSSLISVNISYNQLEGPLPDNEAFLRAPFESLKNNKGLCGNVTGLMLCQPKSIKKRQKGILLVLFPILGAPLLCGMGVSMYILYLKARKKRVQAKDKAQSEEVFSLWSHDGRNMFENIIEATNNFNDELLIGVGGQGSVYKVELRPSQVYAVKKLHLQPDEEKPNFKAFKNEIQALTEIRHRNIIKLCGFCSHPRFSLLVYKFLEGGSLDQILSNDAKAAAFDWKMRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQNEALISDFGTAKILKPGSHTWTTFAYTIGYAAPELSQTMEVTEKYDVFSFGVICLEIIMGKHPGDLISSLLSSSSATITDNLLLIDVLDQRPPQPLNSVIGDIILVASLAFSCLSENPSSRPTMDQVSKNLMMGKSPLADQFPMIRLGQLL* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2001 1009 SMART LRR_typ_2 186 210 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 307 330 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 571 594 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 523 546 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 475 499 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 234 258 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 113 137 IPR003591 -
Gso9g2001 1009 SMART LRR_typ_2 331 355 IPR003591 -
Gso9g2001 1009 PANTHER LRR RECEPTOR-LIKE KINASE 6 190 - -
Gso9g2001 1009 PANTHER LRR RECEPTOR-LIKE KINASE 185 261 - -
Gso9g2001 1009 PANTHER LRR RECEPTOR-LIKE KINASE 261 339 - -
Gso9g2001 1009 PANTHER LRR RECEPTOR-LIKE KINASE 337 1008 - -
Gso9g2001 1009 SUPERFAMILY L domain-like 364 634 - -
Gso9g2001 1009 ProSiteProfiles Protein kinase domain profile. 719 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2001 1009 Gene3D Phosphorylase Kinase; domain 1 679 797 - -
Gso9g2001 1009 Pfam Leucine Rich Repeat 574 594 IPR001611 GO:0005515
Gso9g2001 1009 ProSiteProfiles Leucine-rich repeat profile. 525 547 IPR001611 GO:0005515
Gso9g2001 1009 Gene3D Ribonuclease Inhibitor 382 450 IPR032675 -
Gso9g2001 1009 Gene3D Ribonuclease Inhibitor 451 518 IPR032675 -
Gso9g2001 1009 SUPERFAMILY RNI-like 94 417 - -
Gso9g2001 1009 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Gso9g2001 1009 Pfam Leucine rich repeat 501 560 IPR001611 GO:0005515
Gso9g2001 1009 Gene3D Ribonuclease Inhibitor 303 381 IPR032675 -
Gso9g2001 1009 Pfam Protein kinase domain 722 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2001 1009 Gene3D Ribonuclease Inhibitor 519 640 IPR032675 -
Gso9g2001 1009 Gene3D Ribonuclease Inhibitor 202 302 IPR032675 -
Gso9g2001 1009 Gene3D Ribonuclease Inhibitor 47 201 IPR032675 -
Gso9g2001 1009 SUPERFAMILY Protein kinase-like (PK-like) 699 989 IPR011009 -
Gso9g2001 1009 Gene3D Transferase(Phosphotransferase) domain 1 798 998 - -
Gso9g2001 1009 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Gso9g2001 1009 ProSitePatterns Tyrosine protein kinases specific active-site signature. 843 855 IPR008266 GO:0004672|GO:0006468
Gso9g2001 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 261 339 - -
Gso9g2001 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 337 1008 - -
Gso9g2001 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 190 - -
Gso9g2001 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 185 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2001 Gso-Chr9 44486444 44490301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2001 44 891 Receptor kinase-like Gene Family AT4G08850 43.516 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso9g2001 Pkinase 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2001 - - gmx:100803216 1981.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1812 18 50656758 50660704 Gso9g2001 9 44486444 44490301 GST