Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1992 ATGGCTTCCGCCACCGTGGATTCCGACTTTGAATTCTTGGAATCTGTTCAACAATACCTACTTGGACACGATTCCGTCAATCTCATGCCTGAAACCCACCAAACTGCATCTCATGATCCATTTTCAGACCCTAAATGTGATGGTGATTTGGAGAACATCATTGTTTTCCGAAGTGAGGATGCAACGGCTGTGGTGGCGCGTGATGTCCACGCGCCACCAACATGGAAGCATTACAGAGGGGTGAGACGTAGACCATGGGGAAAGTTTGCGGCCGAGATTAGGGATCCAAAGAAGAATGGAGCTAGGGTTTGGCTTGGGACTTATGATACTGAAGAGAAAGCAGCTTTGGCATATGATAAAGCCGCTTTCAAAATGCGTGGGCGAAAAGCTAAGCTGAATTTTCCTCACCTTATTGATTCCGATATGTTGTCGGAGGAGGTGATGGTGACAACTTCCAAGAGAAGGTTAGCGGAAAATTCTCCACCCTCATCACCATCGTGGTCGTGTTCAGATGATAGCTCAGAATCACAAGGGGCAAAGAGGAGGAAGAGCCTGGCTGATCTACTGAATAAATTAGCCAAGAATAGAAGCCATGTCAAGGTGGAACGTTGA 612 0.4706 MASATVDSDFEFLESVQQYLLGHDSVNLMPETHQTASHDPFSDPKCDGDLENIIVFRSEDATAVVARDVHAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGRKAKLNFPHLIDSDMLSEEVMVTTSKRRLAENSPPSSPSWSCSDDSSESQGAKRRKSLADLLNKLAKNRSHVKVER* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1992 203 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 198 - -
Gso9g1992 203 MobiDBLite consensus disorder prediction 153 183 - -
Gso9g1992 203 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Gso9g1992 203 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Gso9g1992 203 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Gso9g1992 203 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Gso9g1992 203 PANTHER DNA-BINDING DOMAIN 1 198 IPR044808 GO:0003700|GO:0009873
Gso9g1992 203 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Gso9g1992 203 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Gso9g1992 203 MobiDBLite consensus disorder prediction 153 174 - -
Gso9g1992 203 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Gso9g1992 203 CDD AP2 76 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1992 Gso-Chr9 44331734 44332607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1992 63 140 AP2-EREBP Transcription Factor Family AT2G44840 74.684 1.61e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso9g1992 AP2 4.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1992 K09286 - gmx:100806588 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1802 18 50488084 50488578 Gso9g1992 9 44331734 44332607 GST
Gso3g0959 3 33681380 33682178 Gso9g1992 9 44331734 44332607 PCT