Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1988 ATGAATCGTAGAGTGAGGAGGAAGGTGGCGAGGAAGAACAAAGGGAATGTGGTGCAGTCTAGTTTCCCTGAAGATCAAGATGAGGTTTTGGATTTGGAACCCCAAAGGCAAGGGTTTGTTGATTGGAAGTGCTTGCCCGATGATACAGTAATTCAGCTGTTGTCATGTCTGAGTTATCAAGATCGAGCTAGCTTGTCGTCAACTTGTAAGACATGGAGGTCTCTTGGCAGCTCCCTGTGTTTGTGGAGTTCTCTGGATCTTCGTTCTCACAGGTTTGATGCCGGCATGGCTTCATCGCTTGCTCCCAGGTGTGTGCATCTTCAGAAACTCAGGTTTCGCGGGGCAGAGTCTGCTGATGCGATAATTCATCTTCGAGCTAGGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTACAGATGCAACTCTCTCAGTGATTGTGGCTCGGCATGAGTTACTTGAGAGCCTTCAGCTTGGACCGGATTTCTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTAAATTGAATAAACTTAGACTCTCAGGCATCAGGGACGTAAATGCTGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGGTTCATTGATTGTCTGAATGTTGATGAGGTTGCGCTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTTGCGGGGACATCAAGTATGAAATGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGGTTAGATGTTTCAAGAACTGATGTTGGTCCATCTGCTCTTTTAAGAATGTTATCCTTATCACAGAATTTGAGGGTTTTAATTGCTCTGAATTGTCCCATCCTTGAAGAAGACACCAGCTTCTCTGCTAGCAAATATAAAAACAAGTTATTAATCTCTCTTCGTACTGATATTTTTAAAGGGCTGGCTTCTTTATTGTTTGATAATACAAGGAGAGGAAACAATGTATTTTTAGACTGGAGGACCTCAAAGAATAATGATAAGGACCTCAATGAAATTATACCCTGGCTTGAGTGGATGCTATCCCATACACTTCTGCGTTCTGCTGAGAGTCCCCAACAGGGTCTTGATAGTTTCTGGGTTGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTTGCAAAATCTTGGAGAGAAGGGCTTCAATCTGAGGCAGCCAAGGCCATTGCAAATTTGTCCGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTCAGATTCTTGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTGGCGGAAGAGGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGTGCGGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGGGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCCCTTGAGGCTCTTGTTCAACTTACTTGCTCTCCCCACGAGGGTGTCAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAGGCCATTGCCGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTGTGGGGATTATCAGTCTCGGAAACTAACAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCCGCAGGAGCACTATGGAATCTTGCTTTCAATGCTAGTAATGCTCTAAGAATAGTAGAGGAAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTCCTTATGTTCTCTGATCTACAAGCATTTGCGGCTGCTGCTGCATCATCTGCTCCTGCAGCATTAGCACAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGGAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACCATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAAAGCCTGGGAGCATCAAGAGTTCTGCGTGGTGCAGCTGCTGCAGCAACTGCTCCACTTGAAGCAAAAATCTTTGCCAGAATTGTTCTGCGCAATCTTGAGTATCACCAGATAGAGCAAGCACTAGCGTAG 2766 0.4595 MNRRVRRKVARKNKGNVVQSSFPEDQDEVLDLEPQRQGFVDWKCLPDDTVIQLLSCLSYQDRASLSSTCKTWRSLGSSLCLWSSLDLRSHRFDAGMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLRELSGDYCRKITDATLSVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPKLNKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDVGPSALLRMLSLSQNLRVLIALNCPILEEDTSFSASKYKNKLLISLRTDIFKGLASLLFDNTRRGNNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDSFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIQILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTCSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMSALALAYMFDGRMDEYALVVTSSESISKSVSLDGARRMALKHIEAFVLMFSDLQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQSLGASRVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEQALA* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 502 544 IPR000225 GO:0005515
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 424 458 IPR000225 GO:0005515
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 594 630 IPR000225 GO:0005515
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 679 715 IPR000225 GO:0005515
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 555 586 IPR000225 GO:0005515
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 465 499 IPR000225 GO:0005515
Gso9g1988 921 Pfam Armadillo/beta-catenin-like repeat 632 674 IPR000225 GO:0005515
Gso9g1988 921 Gene3D - 680 781 IPR011989 -
Gso9g1988 921 Gene3D - 591 679 IPR011989 -
Gso9g1988 921 Gene3D - 347 523 IPR011989 -
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 556 587 IPR000225 GO:0005515
Gso9g1988 921 Pfam F-box-like 43 88 IPR001810 GO:0005515
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 602 644 IPR000225 GO:0005515
Gso9g1988 921 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Gso9g1988 921 SMART fbox_2 45 85 IPR001810 GO:0005515
Gso9g1988 921 SMART LRR_CC_2 206 231 IPR006553 -
Gso9g1988 921 SMART LRR_CC_2 126 151 IPR006553 -
Gso9g1988 921 SMART LRR_CC_2 180 205 IPR006553 -
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Gso9g1988 921 SUPERFAMILY ARM repeat 378 746 IPR016024 -
Gso9g1988 921 PANTHER PROTEIN ARABIDILLO 1 1 906 IPR044583 -
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 557 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 460 500 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 717 758 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 419 459 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 545 586 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 632 675 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 676 716 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 501 544 IPR000225 GO:0005515
Gso9g1988 921 SMART arm_5 591 631 IPR000225 GO:0005515
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 687 729 IPR000225 GO:0005515
Gso9g1988 921 SUPERFAMILY RNI-like 41 295 - -
Gso9g1988 921 Gene3D Ribonuclease Inhibitor 36 313 IPR032675 -
Gso9g1988 921 Gene3D - 524 590 IPR011989 -
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Gso9g1988 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 643 688 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1988 Gso-Chr9 44296493 44308554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1988 573 760 U-box Gene Family AT2G23140 34.921 9.39e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1988 - - gmx:100805530 1679.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2067 18 53622398 53636800 Gso9g1988 9 44296493 44308554 GST