Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1984 ATGGGTGAGAAAGATGATGATTTTGGGTTGAGTTTGAGTTTGAGTTTGGGGAGAGTGAACCAACAACAACAACAACCTCCTCCTTTGAATCACATGCACCAGCCTCAACAACTACAAACTGTTCCCATGAATCACAATAAGACTCTCTTTGGTGATTTGTCTCAGTTACCAGCAGACCGGAGCTCCGAAATGATACGAGGAATCGACGTCAATTCGGCGGCGGAGTGCGACGGCGTTTCCTCGCCGAACAGCGCTGTCTCGAGCGTGAGCGGCGGCGACGGCAAGCAGAGCGAGAGGGACGACGATAATAATGCTGCCGCCGTGGCCGGTGAGAGGACCTCGTGCTCGCGAGGGAGCGACGATGACGACGGTGGTGGCAGCGATGCCTCGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAGCACGCTGAATCCGAAACGGAAGCAAGCGTTGGCAGAGGAGTTGAATCTGAAGCCCAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAGATGCTATGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTCCAAGAGCTTAGGGCATTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATATGCCCTTCTTGTGAGCGTACTCACTCCTTTGCATCCTCCTCCACTGCCACCGTCCACTCGGCGGTGGCGGCCACATCGAGCAATCGCAAACTGTTCGGCACAAACATCCGGCTGCCTGTGTCCTTCAACACTCGGCCATTTGAAGGCCCAATTCCCCGGCCATAA 879 0.5165 MGEKDDDFGLSLSLSLGRVNQQQQQPPPLNHMHQPQQLQTVPMNHNKTLFGDLSQLPADRSSEMIRGIDVNSAAECDGVSSPNSAVSSVSGGDGKQSERDDDNNAAAVAGERTSCSRGSDDDDGGGSDASRKKLRLTKEQSMVLEETFKEHSTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTICPSCERTHSFASSSTATVHSAVAATSSNRKLFGTNIRLPVSFNTRPFEGPIPRP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1984 292 MobiDBLite consensus disorder prediction 74 138 - -
Gso9g1984 292 MobiDBLite consensus disorder prediction 14 51 - -
Gso9g1984 292 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Gso9g1984 292 MobiDBLite consensus disorder prediction 115 138 - -
Gso9g1984 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 275 - -
Gso9g1984 292 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Gso9g1984 292 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Gso9g1984 292 MobiDBLite consensus disorder prediction 1 51 - -
Gso9g1984 292 PANTHER - 4 275 - -
Gso9g1984 292 Coils Coil 200 220 - -
Gso9g1984 292 SUPERFAMILY Homeodomain-like 118 188 IPR009057 -
Gso9g1984 292 MobiDBLite consensus disorder prediction 76 93 - -
Gso9g1984 292 Gene3D - 124 192 - -
Gso9g1984 292 SMART HOX_1 129 191 IPR001356 GO:0003677
Gso9g1984 292 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Gso9g1984 292 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Gso9g1984 292 CDD homeodomain 131 188 IPR001356 GO:0003677
Gso9g1984 292 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1984 Gso-Chr9 44262559 44266182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1984 29 244 Homeobox Transcription Factor Family AT3G60390 58.800 2.80e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g1984 HD-ZIP_N 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1984 K09338 - gmx:100804456 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2070 18 53662724 53666676 Gso9g1984 9 44262559 44266182 GST
Gso7g0954 7 11722188 11725996 Gso9g1984 9 44262559 44266182 PCT
Gso3g0986 3 34042030 34045814 Gso9g1984 9 44262559 44266182 PCT