Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1975 ATGGGGTTTAGGAATAATGCAATTCAGGCTGGGAGTTTGGATGTGGGAAAGTCAAAGGTAAGTTTGCAAAAGGATGGTGCTGAGAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGTAGCTGTATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATCTGAGAAAAGCAAGAAGGAAACAAATGCTCCTCCAGGGTCCTCTACATCAACCAGTAATGCAGAAAGTGTCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAATTGGCCACTAGGAATTTCAGGCCGGAGAGTCTTCTTGGCGAGGGAGGGTTTGGTTGTGTGTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGTACTGGGCTTACTGTTGCAGTCAAGACCCTCAACCATGATGGACTGCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTTGTCCATCCGAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCTCGTGGAAGTTTGGAGAACCACCTCTTCAGAAGGTCGTTGCCTCTTCCTTGGTCTATTAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTACTTTTCTCCATGAAGAAGCTCAGAGGCCTGTAATCTATCGTGATTTTAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCCAAACTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAATATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGACGATCTATCGATAAAAATAGACCAAACGGGGAACACAATCTTGTGGAGTGGGCAAGACCTGTACTAGGAGACCGGAGGATGTTACTACGAATAATTGACCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGTCACAGAAGGCTGCGCAGCTTGCTGCTCAATGCCTTAGCCGTGATCCGAAATCCAGACCTATGATGAGCGAAGTTGTTCAAGCTCTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATCTCATCTTATCACTTCCAGGTTGCGCGAGTAGATCGTACCATGTCCATGCCTAAAAATGGTATGCAAGCACAGTTAGCATCTTTATCGAGGAAGGGTCAACCAGTGAGGATCTTGTCAAGTCCAAAAGGTCCTCATGGTTCTCCATATCATCACTATATCAAGTCACCAAAACCTAATGGATAA 1422 0.4353 MGFRNNAIQAGSLDVGKSKVSLQKDGAEKEIGCCVKFCFIGSCIPSRSKVDNSISGTSANSVEKTSASEKSKKETNAPPGSSTSTSNAESVPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLTFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGSQKAAQLAAQCLSRDPKSRPMMSEVVQALKPLQNLKDMAISSYHFQVARVDRTMSMPKNGMQAQLASLSRKGQPVRILSSPKGPHGSPYHHYIKSPKPNG* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1975 473 MobiDBLite consensus disorder prediction 50 65 - -
Gso9g1975 473 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Gso9g1975 473 MobiDBLite consensus disorder prediction 436 473 - -
Gso9g1975 473 PANTHER OS01G0588500 PROTEIN-RELATED 57 465 - -
Gso9g1975 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gso9g1975 473 Gene3D Transferase(Phosphotransferase) domain 1 208 425 - -
Gso9g1975 473 CDD STKc_IRAK 128 405 - -
Gso9g1975 473 Gene3D Phosphorylase Kinase; domain 1 89 207 - -
Gso9g1975 473 PANTHER RECEPTOR-LIKE KINASE PLANT 57 465 - -
Gso9g1975 473 MobiDBLite consensus disorder prediction 50 97 - -
Gso9g1975 473 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1975 473 SUPERFAMILY Protein kinase-like (PK-like) 108 425 IPR011009 -
Gso9g1975 473 Pfam Protein kinase domain 125 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1975 473 MobiDBLite consensus disorder prediction 72 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1975 Gso-Chr9 44166859 44171017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1975 80 418 Glycoside Hydrolase AT3G07070 51.705 8.20e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso9g1975 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1975 - - gmx:100802866 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2086 18 53830980 53835365 Gso9g1975 9 44166859 44171017 GST
Gso19g0173 19 2131758 2137109 Gso9g1975 9 44166859 44171017 PCT
Gso9g1975 9 44166859 44171017 Gso19g0173 19 2131758 2137109 PCT