Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1972 ATGGCAATGATGAAAGAGAATATTATTGAAGTGAGCCTTGGAAGGAGGCAAATGTCTATGACAGAAGGTGAGTTCCAAGGAACACGGAGCGTCAAGAGACGACGAAGAGAGGTTGCTGCAGCCGCAGGCAGTGGTGATGATAACCACCAACAGCAGTTACCACAACAAGAAGTTGGTGAAAATACTACAGTCAACACTACAAAGAGAAGCTCAAGATTTCGCGGTGTTAGCAGACATAGATGGACGGGTCGATATGAAGCTCACTTGTGGGACAAGCTTTCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGTATACCTTGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACTTCAACTTTCACAAATTTTCCAATATCAGATTATGAGAAAGAGATACAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCGAGGCACCACCACAATGGTAGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTACCTTGGAACCTACAGCACCCAAGAGGAAGCTGCGCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGAATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCTTCAGGAGGAGGCACCCTAGAAGCAAATCTTGAATCACATGCAGCACTAGAGCATCAAAAGGTGGCATCCCCATCTAATTATGCTCTAACAGAAGAGTCTAAGTCTTTGGCCCTTCACAACAGTTTTTTCAGTCCATATTCTCTGGATTCCCCTGTAAAGCATGAAAGATTTGGAAACAAAACCTACCAATTCTCAAGCAATAAGTCATCTTCTCCCACTGCACTTGGTCTCCTTCTCCGCTCTTCGTTATTTAGGGAATTAGTTGAAAAGAATTCAAATGTTTCTGGAGAAGAAGATGATGGGGAAGCCACAAAGGATCAACAGACACAAATAGCTACTGATGATGATCTGGGTGGAATCTTCTTCGATAGCTTTAGTGATATTCCATTTGTGTGTGACCCCAATAGATACGACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA 1179 0.4207 MAMMKENIIEVSLGRRQMSMTEGEFQGTRSVKRRRREVAAAAGSGDDNHQQQLPQQEVGENTTVNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIQIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWLKPSGGGTLEANLESHAALEHQKVASPSNYALTEESKSLALHNSFFSPYSLDSPVKHERFGNKTYQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVSGEEDDGEATKDQQTQIATDDDLGGIFFDSFSDIPFVCDPNRYDLELQERDLHSIF* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1972 392 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 376 - -
Gso9g1972 392 Gene3D AP2/ERF domain 71 140 IPR036955 GO:0003700|GO:0006355
Gso9g1972 392 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Gso9g1972 392 SMART rav1_2 72 144 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Gso9g1972 392 MobiDBLite consensus disorder prediction 21 75 - -
Gso9g1972 392 Pfam AP2 domain 71 130 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 SUPERFAMILY DNA-binding domain 71 140 IPR016177 GO:0003677
Gso9g1972 392 CDD AP2 71 140 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700|GO:0006355
Gso9g1972 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 376 - -
Gso9g1972 392 MobiDBLite consensus disorder prediction 27 42 - -
Gso9g1972 392 MobiDBLite consensus disorder prediction 45 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1972 Gso-Chr9 44142595 44144933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1972 68 268 AP2-EREBP Transcription Factor Family AT5G57390 61.951 1.98e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso9g1972 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1972 - - gmx:100792612 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2090 18 53863638 53866440 Gso9g1972 9 44142595 44144933 GST