Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1968 ATGTCAAAAATTTCTGGTCCTAGTGGTCCAGAAGAGATAGAAGAGAAGAGAGTAACAAAGGAAGAAAAAATCAAATCTGCTAAAACTGAGATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGATGATGCTGGAAAGAGTAGAAAAGGACTACCACTCCCTTCAACTCCGTTTCTTTGACATCCATCACGAAGATGTTTCAAAGAAAGGTTTAGCTGATTCTTCTTCTTGCCATGATCATGAAACTGAAGAGCTTGTGTCACTTTGCCTTGGAAGGAGTCCAATGGTGCCTAAGAAGGAAGCAAGAATTGGAAACTCCAACAAACTAAAAGAAGATGTTGGACCCAACCTTACACTTGGATTAGACTCCAAACACCTTTTGTCAATGGAGGTTGTGTCTGATTTTAGTCCCATGAACAGCTCCGAACAACCAAAGGAAGCGGAAGAAGAGGTAACATTGTCAACAAATCAATCAGCAAAAGTGATAAATGCAAATGATGACATGTCAGATCAAATGCCAGCCAAGAGAGCCAGGGTATCTGTGAGAGCTAGATGTGATACTCCCACGATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAGAGGAATCCTTGTCCAAGGGCATACTATCGTTGCACAGTTGCACCAACTTGCCCAGTCAGGAGGCAGGTGCAAAGGTGTGCTGAGGACTTGTCCATCTTAATCACCACATATGAAGGAACTCATAACCACCCTCTTCCAGTTTCAGCCACAGCCATGGCTTCAACCACTTCAGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCACCACCCAACAAACCACAATTCTGCATCTTTTGGAAATGCTCCTACCACACTACAAAGTGGTCTGAGTTTCAGTCACCAGTTTGATGAATCAAGAACCAAACAAGTTTTCTCACCCCCAAACCATGCTTCACTACACATGTTCCCAACAATCACTCTAGACATGACTTATTCAGCTTCTAATTCCTCCTCATTAACTCAATTCCAGCATCGTTTACCTTCAACAATGGCATCAATTTCAAACTTAAAATTTTCTCCAGCTAGTCTCAGCTGTTCACAAGATAATAACTTCATAACCTCCATTTGGAGTAAGGGGGGTGACACTACAACACCACCAATAATTGACAAAATCCCCACTAGGCCAGTTATCAAGGGAAATCCATATTTCCAAGAAAATTTCTACCAGCAAAGCATAACAAACCAAACTCCTTTCAAAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTCTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGGATTGGATCAAACAGTGGGAACCAAGAAGGAGCAGAGAATGTTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGATCATCTTCAATTGGCTTCATCCAATCCCTTGAACCAAAATGGGAAAGGGTGCTTAACAGGCTACTTCAAAAGTTTGTCCTCTAAGAATTCCGAGGCAGGAAACTTCATTTTTCTCCAACCACCATTGCCATTTTCTTTCTCCAAGAGTGGCACAAATCAGCTCAACCATTATGTTCCAGAAATGAACACACATCATTAG 1626 0.4213 MSKISGPSGPEEIEEKRVTKEEKIKSAKTEMGEVKEENERLKMMLERVEKDYHSLQLRFFDIHHEDVSKKGLADSSSCHDHETEELVSLCLGRSPMVPKKEARIGNSNKLKEDVGPNLTLGLDSKHLLSMEVVSDFSPMNSSEQPKEAEEEVTLSTNQSAKVINANDDMSDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKRNPCPRAYYRCTVAPTCPVRRQVQRCAEDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSHHPTNHNSASFGNAPTTLQSGLSFSHQFDESRTKQVFSPPNHASLHMFPTITLDMTYSASNSSSLTQFQHRLPSTMASISNLKFSPASLSCSQDNNFITSIWSKGGDTTTPPIIDKIPTRPVIKGNPYFQENFYQQSITNQTPFKEALAETITKAISTDPSLRSVIAAAVSSIVGIGSNSGNQEGAENVLGSGLNLKLGDHLQLASSNPLNQNGKGCLTGYFKSLSSKNSEAGNFIFLQPPLPFSFSKSGTNQLNHYVPEMNTHH* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1968 541 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 23 529 - -
Gso9g1968 541 SMART WRKY_cls 191 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g1968 541 Coils Coil 17 58 - -
Gso9g1968 541 ProSiteProfiles WRKY domain profile. 186 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g1968 541 MobiDBLite consensus disorder prediction 1 37 - -
Gso9g1968 541 Pfam WRKY DNA -binding domain 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g1968 541 Gene3D WRKY domain 176 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g1968 541 MobiDBLite consensus disorder prediction 136 156 - -
Gso9g1968 541 SUPERFAMILY WRKY DNA-binding domain 184 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g1968 541 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 529 IPR044810 GO:0003700
Gso9g1968 541 MobiDBLite consensus disorder prediction 9 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1968 Gso-Chr9 44093994 44097024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1968 31 510 WRKY Transcription Factor Family AT5G15130 40.577 3.08e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g1968 WRKY 9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1968 - - gmx:100792084 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2095 18 53931842 53934777 Gso9g1968 9 44093994 44097024 GST