Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1964 ATGGCCTTCCCACCTCCTCACGGTTTCACGTTTAACACTACTCATGAAGAAGATCACCACCACCTCCCTCCAACCTCTCTCAACCCCTTCCCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCATCTTTCATGTTGAAGCGGTCCATGTCGTTTTCCGGCATTGAGAACAAGTGCGATGAAGTACTACATGGAGACGATGAGTTATCCGATGATGGGATCTTCCAGTGTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGATCTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTTCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAGTTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCATTTGGAGAAGGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCCGATAATGATGTTCTTAAGGTTGAGAACCAGAAACTACAGGCAGAGTTACAAGCTGTAAAAAGTAGGGATTGGTGTGAAGCTGGAATGATGAGCCATAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGTTTAGAGATTAATCTAGATCACTCAAGAACACTAGGTTTGAATAGTCCCATATCTTCTCAGAACGGTAAAAACCTACTACTACCCAATTCGTTAAACCCCACCAGCATAACACAACTCCTTCAAGATGATGGCTTGTGCAACATGTTTCACAACATTGATGCACAACAGAACTTTTGGCCCTGGCCTGATCAGCAGCACCAGCGTTTCCATTGA 813 0.4514 MAFPPPHGFTFNTTHEEDHHHLPPTSLNPFPSLPPQHFQGGASFMLKRSMSFSGIENKCDEVLHGDDELSDDGIFQCGEKKKRLNLEQVKALEKSFDLGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKHLEKEYEVLKKQFEAVKADNDVLKVENQKLQAELQAVKSRDWCEAGMMSHKKETEGSWSNGSDNSLEINLDHSRTLGLNSPISSQNGKNLLLPNSLNPTSITQLLQDDGLCNMFHNIDAQQNFWPWPDQQHQRFH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1964 270 SMART HOX_1 78 139 IPR001356 GO:0003677
Gso9g1964 270 CDD homeodomain 80 136 IPR001356 GO:0003677
Gso9g1964 270 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Gso9g1964 270 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Gso9g1964 270 Coils Coil 127 175 - -
Gso9g1964 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 270 IPR045224 GO:0003700
Gso9g1964 270 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Gso9g1964 270 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 270 - -
Gso9g1964 270 Gene3D - 76 150 - -
Gso9g1964 270 SUPERFAMILY Homeodomain-like 77 136 IPR009057 -
Gso9g1964 270 MobiDBLite consensus disorder prediction 1 32 - -
Gso9g1964 270 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Gso9g1964 270 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Gso9g1964 270 Pfam Homeobox associated leucine zipper 135 174 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1964 Gso-Chr9 44054786 44057202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1964 1 263 Homeobox Transcription Factor Family AT5G15150 48.495 1.56e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g1964 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1964 K09338 - gmx:100797920 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2108 18 54059799 54062613 Gso9g1964 9 44054786 44057202 GST
Gso13g0439 13 16333510 16336777 Gso9g1964 9 44054786 44057202 PCT
Gso19g0186 19 2278503 2282121 Gso9g1964 9 44054786 44057202 PCT
Gso9g1964 9 44054786 44057202 Gso13g0439 13 16333510 16336777 PCT
Gso9g1964 9 44054786 44057202 Gso19g0186 19 2278503 2282121 PCT