Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1958 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATATTGGTGTCTTATATTCAGGAACATGGTCCTGGAAATTGGAGGGCAGTTCCTGCCAAAACAGGGTTGTCAAGATGCAGCAAGAGTTGCAGACTTAGATGGACGAATTACCTGAGGCCAGGAATCAAGCGTGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAAAGAACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAGAAAGAAGCTGAAGAAGATGCAAGCAGGCGGTGAAGGTGGTAGCTTTGGAGAAGGGTTTTCAGCCTCAAGGCAAATCCCTAGAGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCCCTCAGTGAAGCTCTTTCACCAGAGAAAAAGCCATCTTGTTTATCTGCCTCAAACTCAAACCCTTCAGATAGTAGCAGCTCCTTCTCTTCCACAAAACCAACAACAACACAATCTGTGTGCTATGTATCAAGTGCTGACAACATAGCTAGAATGCTCAAGGGTTGGATGAAGAACCCACCAAAGTCCTCAAGAACCAACTCGTCTATGACTCAGAACTCATTCAACAACTTAGCAGGTGCTGATACTGCTTCTAGTAGTGGAGCAAAGGGACCACTAAGCAGTGCCGAATTGTCTGAGAATAATTTTGAATCCTTGTTTGATTTTGATCAGTCTTTGGAGTCTTCAAACTCTGATCAATTCTCTCAGTCCTTGTCTCCTGAGGCCACTGTTTTGCAAGACGAAAGCAAGCCTGATATTAATATTGCTGCAGAAATTATGCCCTTCTCTTTGCTTGAGAAATGGCTCCTTGATGAGGCAGGTTGCCAAGAGAAATTAGTTGGTTGTTGTGGTGATGCCAAGTTTTTCTAA 999 0.4364 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQAGGEGGSFGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKKPSCLSASNSNPSDSSSSFSSTKPTTTQSVCYVSSADNIARMLKGWMKNPPKSSRTNSSMTQNSFNNLAGADTASSSGAKGPLSSAELSENNFESLFDFDQSLESSNSDQFSQSLSPEATVLQDESKPDINIAAEIMPFSLLEKWLLDEAGCQEKLVGCCGDAKFF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1958 332 CDD SANT 69 112 IPR001005 -
Gso9g1958 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 325 - -
Gso9g1958 332 MobiDBLite consensus disorder prediction 216 251 - -
Gso9g1958 332 CDD SANT 16 61 IPR001005 -
Gso9g1958 332 Gene3D - 13 66 - -
Gso9g1958 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso9g1958 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso9g1958 332 SMART sant 66 114 IPR001005 -
Gso9g1958 332 SMART sant 13 63 IPR001005 -
Gso9g1958 332 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 325 - -
Gso9g1958 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso9g1958 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso9g1958 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso9g1958 332 MobiDBLite consensus disorder prediction 158 191 - -
Gso9g1958 332 MobiDBLite consensus disorder prediction 212 251 - -
Gso9g1958 332 MobiDBLite consensus disorder prediction 121 141 - -
Gso9g1958 332 Gene3D - 69 124 - -
Gso9g1958 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso9g1958 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso9g1958 332 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1958 Gso-Chr9 43969741 43971687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1958 1 332 MYB Transcription Factor Family AT5G62470 49.866 2.78e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g1958 Myb_DNA-binding 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1958 K09422 - gmx:780543 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2114 18 54143076 54145246 Gso9g1958 9 43969741 43971687 GST
Gso13g0432 13 16165716 16167567 Gso9g1958 9 43969741 43971687 PCT
Gso19g0197 19 2488068 2490148 Gso9g1958 9 43969741 43971687 PCT
Gso9g1958 9 43969741 43971687 Gso13g0432 13 16165716 16167567 PCT
Gso9g1958 9 43969741 43971687 Gso19g0197 19 2488068 2490148 PCT