Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1957 ATGGACATAACCCCAACAACAACGATCAACAACAACAACACTACTCCCAGTGCAACAACAAAATCCCCAGAAAATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTCATCTTTTTCGAATGGTGTCCTCAAACGCACCCACCACCACCACCACCTCCACCACCCTATCCCTCCGGTGGTTACCTACAAAGAATGCCTCAAAAATCACGCCGCCAACTTGGGTGGCCACGCCTTAGATGGCTGCGGCGAGTTCATGCCCTCTCCGACCGCCACCGCTGCCGACCCCAGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGAGCCCCCCATCGCCTCCACCACCACGCACGTCATCGAGTATCAGCCCCACCACCGCCACCACCCTCCCCCGCCGCTGCACGCGGCGGCGGTAGCCACCCGCAGCCCCAATTCTGCTTCCCCACCGCCGATCTCCTCGTCGTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGACTGGCGGCTCCGCCGGAGAGCACCGCCGCGCCTGCCGCCGCGCCCACGAGAAAGCGGTTCCGCACGAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCACAAGTTCGCGGAGAAAGTAGGGTGGAAGATTCAGAAGCGCGACGAGGATTTGATTCACGAAATTTGCAACGAAGTTGGCGTTGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTTGCCAAAAAGGATAACAATAATATTGTTACTAGTAATGATATTAATATTACTACTAAAAATAATATTTCTACTGATAATGATGCAAATGGGAGTGATGTCAAGGTTTTTGAAAACCCTAACAATGATGGTGGTGAAGATCGCGCTGAAGATCCGAGTAGTAATCACTATGATGGGGTGAACGTTGTTGGTGCTAATGGATCTTCTAGTTCTTGA 999 0.5395 MDITPTTTINNNNTTPSATTKSPENETETPTRITTPITPTTTKTSSFSNGVLKRTHHHHHLHHPIPPVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPIASTTTHVIEYQPHHRHHPPPPLHAAAVATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPAAAPTRKRFRTKFSQEQKEKMHKFAEKVGWKIQKRDEDLIHEICNEVGVDRSVLKVWMHNNKNTFAKKDNNNIVTSNDINITTKNNISTDNDANGSDVKVFENPNNDGGEDRAEDPSSNHYDGVNVVGANGSSSS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1957 332 MobiDBLite consensus disorder prediction 283 332 - -
Gso9g1957 332 MobiDBLite consensus disorder prediction 283 298 - -
Gso9g1957 332 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 297 - -
Gso9g1957 332 MobiDBLite consensus disorder prediction 1 48 - -
Gso9g1957 332 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Gso9g1957 332 SUPERFAMILY Homeodomain-like 196 264 IPR009057 -
Gso9g1957 332 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 203 260 IPR006455 -
Gso9g1957 332 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 297 - -
Gso9g1957 332 MobiDBLite consensus disorder prediction 139 168 - -
Gso9g1957 332 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Gso9g1957 332 Gene3D - 190 264 - -
Gso9g1957 332 MobiDBLite consensus disorder prediction 301 315 - -
Gso9g1957 332 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Gso9g1957 332 CDD homeodomain 204 257 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1957 Gso-Chr9 43936106 43937725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1957 1 259 ZF-HD Transcription Factor Family AT5G15210 52.124 1.39e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso9g1957 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1957 - - gmx:100789447 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2115 18 54176516 54178158 Gso9g1957 9 43936106 43937725 GST
Gso13g0430 13 16106839 16108453 Gso9g1957 9 43936106 43937725 PCT
Gso19g0199 19 2541489 2543122 Gso9g1957 9 43936106 43937725 PCT
Gso9g1957 9 43936106 43937725 Gso13g0430 13 16106839 16108453 PCT
Gso9g1957 9 43936106 43937725 Gso19g0199 19 2541489 2543122 PCT