LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso9g1955	ATGGAGGGGACCAGCAGCCAAAGCACGTTTGCCTTCATCCCTAGCACAATTGAGACACCAAGTCCAAGCATCCCTGAGATATCATCATCATCTTCCCCTGGTTCTCTTGCAAGAATTGCACAAAGTTACCCTCCCGGCTTTCCCAGAAAGGTGTTAGCGGAGATTATAGGGACATTTTTGTTGGTGTTTGTGGGAAGTGGTTCTGCTGGGCTAAGCAAGATTGATGAGAGGATGGTGTCAAAGCTTGGAGCATCACTTGCAGGAGGACTCATAGTGACGGTCATGATATACTCAATTGGACACATATCAGGGGCACACATGAATCCCGCGGTTTCTCTTGCTTTCACCGCCGTCAGGCATCTTCCTTGGCCACAGCTCCCATTTTATATAGCAGCTCAACTCACTGGTGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGACCATCAAATGAGATTGGAGGAACATCACCTGCTGGATCACACATTCAAGCCCTAATCATGGAAATGGTGACCACATATACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACTCAAACGCGACAGGACAGCTATCAGGAGTAGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGACCAATATCAGGGGGATCAATGAATCCAGCAAGGACATTAGGTCCTGCAATTGCGACATCATACTACAAGGGACTTTGGGTATATTTTGTTGGACCTATTACTGGGGCGGTTTTAGCAGCTTGGTCTTACAATGTGATTAGGGACACTGAACACCCTGGTTTTCCCATTTCACTATCCTCCATTTCATCCAAGGTGCGCCAAAGCATTGGTGGAACTGAACAAAAAAGCGACCAAAGATGCTTTGTGTGA	882	0.4728	MEGTSSQSTFAFIPSTIETPSPSIPEISSSSSPGSLARIAQSYPPGFPRKVLAEIIGTFLLVFVGSGSAGLSKIDERMVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFTAVRHLPWPQLPFYIAAQLTGAISASYTLRELLRPSNEIGGTSPAGSHIQALIMEMVTTYTMVFISMAVATDSNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSYYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPISLSSISSKVRQSIGGTEQKSDQRCFV*	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso9g1955	293	SUPERFAMILY	Aquaporin-like	43	263	IPR023271	-
	Gso9g1955	293	ProSitePatterns	MIP family signature.	106	114	IPR022357	-
	Gso9g1955	293	PRINTS	Major intrinsic protein family signature	49	68	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	PRINTS	Major intrinsic protein family signature	88	112	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	PRINTS	Major intrinsic protein family signature	125	144	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	PRINTS	Major intrinsic protein family signature	169	187	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	PRINTS	Major intrinsic protein family signature	200	222	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	PRINTS	Major intrinsic protein family signature	237	257	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	Gene3D	Glycerol uptake facilitator protein.	28	263	IPR023271	-
	Gso9g1955	293	PANTHER	MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED	41	272	-	-
	Gso9g1955	293	Pfam	Major intrinsic protein	47	254	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gso9g1955	293	PANTHER	AQUAPORIN NIP2-1	41	272	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso9g1955	Gso-Chr9	43898002	43902897	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso9g1955	49	263	Major Intrinsic Protein MIP	AT5G37820	47.685	6.05e-66	207

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso9g1955	K09874		-	gmx:100795261	531.561

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso18g2117	18	54218949	54224107	Gso9g1955	9	43898002	43902897	GST