Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1940 ATGTCAACCTCGAACCAGCACCAGTTCCGATACACTCAAACCCCTTCCAAGGTGCTCCACCTTCGCAACCTTCCCTGGGAATGCTCCGAAGAGGAACTCAGAGAGCTCTGCAAACCCTTCGGTAAGATCATCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTCGAATTCGCGGATCTAAATCAAGCCATTTCGATGGTTTCATATTATGCTTCATCTTCAGAACCAGCTATGGTTCGTGGTAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGCCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGTGTGGAAGCTGGGGATGTGAGCATTGATGTTATCCATTTGGTGTTTTCTGCTTTTGGCTTTGTTCACAAAATTGCTACATTCGAAAAGACTGCAGGTTTTCAGGCTCTGATTCAGTTCACTGATGCTGAGACTGCTTCTTCAGCTCGGGATGCACTGGATGGAAGAAGTATACCAAGATACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGAATTTCATATTCCGCACATAAAGATCTGAATATCAAATTTCAGTCAAATCGCAGCAGGGACTATACAAATCCCATGCTTCCTGTTAATTATACCGCTATTGAGGGGGCAGTACAGACTGCTGTAGGCCCTGATGGGAAGAGGAAAGAACCTGAGAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCCTCCACACGGTGTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATATCATAACGGCATCAGCTGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGATTATACAGTGCCGGATCCTAGTCTGCTTGCAGCACAAGGTCCACCAACAGCTTGGCAAAATCCTCAGGCTGCATCTATGTACCCTGGTAGTGCCCCTGCTTATCATACTCAAGTTCCCGGCGGACAAGTGCCATCATGGGATCCATCCCTGCAGGCAGTTAGACCGAGTTATGCATCGGCACCTGGTACTTTTCCTGTTCAAACTGGTGCAGCTCCTCCAATGCCGTCCTATGCGCCAGCATCAGCTATGCCTGTTGCTTCCTCACCTCATGCACAAAGCAGCCCCATGGCTCATAATGCAAATCCAATGGGAATTGCTCAGCTCGGGGTTCCACCCAATGTAAATTTACAGTCCAGTGGTGCTTCACTTTCAGCGCCTGGTTCCTCACCTCTCATGCAAACCAGTCAGGCTGCTCAAGGATTGCTTCAGCCAAATGCAAGACCTGGTGGTGCTTCACCTTCAGGTCAACATTATTATGGTTAG 1491 0.4608 MSTSNQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQGPPTAWQNPQAASMYPGSAPAYHTQVPGGQVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNANPMGIAQLGVPPNVNLQSSGASLSAPGSSPLMQTSQAAQGLLQPNARPGGASPSGQHYYG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1940 496 MobiDBLite consensus disorder prediction 447 471 - -
Gso9g1940 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Gso9g1940 496 MobiDBLite consensus disorder prediction 421 471 - -
Gso9g1940 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Gso9g1940 496 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Gso9g1940 496 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 451 - -
Gso9g1940 496 Gene3D - 3 109 IPR012677 -
Gso9g1940 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Gso9g1940 496 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Gso9g1940 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Gso9g1940 496 MobiDBLite consensus disorder prediction 422 436 - -
Gso9g1940 496 Pfam RRM-like domain 242 320 IPR021790 -
Gso9g1940 496 Gene3D - 110 220 IPR012677 -
Gso9g1940 496 Gene3D - 241 344 IPR012677 -
Gso9g1940 496 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
Gso9g1940 496 SMART rrm1_1 18 91 IPR000504 GO:0003723
Gso9g1940 496 SMART rrm1_1 246 316 IPR000504 GO:0003723
Gso9g1940 496 SMART rrm1_1 113 185 IPR000504 GO:0003723
Gso9g1940 496 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Gso9g1940 496 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Gso9g1940 496 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Gso9g1940 496 PANTHER OS02G0789700 PROTEIN 2 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1940 Gso-Chr9 43752266 43758485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1940 10 206 Eukaryotic Initiation Factors Gene Family AT3G16380 24.528 6.27e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1940 K14948 - gmx:100788927 971.844