Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1938 ATGGGATCAATGGAGAACGTTTCCAAACCAAGGAAGGAAAACCAGAAGTTTGAATTGCCAGCGGGTTTTAGATTTCATCCAAGGGATGAAGAACTCATAAATCACTACCTTACAAAGAAGGTTGTTGACAACTGTTTCTGTGCTGTGGCCATTGCTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGGTTGGCTAAAATGGGTGAAACTGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTAAGGACTAATAGGGCCACTGATGCTGGTTATTGGAAGGCCACAGGCAAAGACAGGGAGATCATAATGGAGAATGCACTCATTGGGATGAAGAAAACCTTGGTTTTCTACAAGGGAAGAGCTCCTAAAGGTGAAAAGACAAACTGGGTTATGCATGAATATAGGTTGGAAGGGAAGCATAATCAACCCAATCCTGGAAAGAGTGAATGGGTGATTTGTAGAGTCTTTGAGAAGAGTCCTTGTGGGAAGAAAATGCATGTTCTAAAGTGTGGAAGGCTCAACAACTCCTCTGGAGAGGAACCATCATCATGTGCTTCTCTATTGCCTCCTTTGATAGATTCTTCTCCATACAACAGTGAAACAAGAACCACCACTGCTGGTGAGTTGTCTCAGTTGACATGCTTCTCTGATCCAAATCAAACTGAGGATCAGAACAACACACATGATGACATTGTTGATAGCATGGAAACTCCTATTTTGAACTTCTCACCCTCTTCAAGACCTGATGATGCATCCACTTTGGCCAAAGCAACCCTTTCTTCAGCTTCAAACCAATCAGCACAGATTGCCCACCAAATTGGGAACTCACAGTTCCCAGATTATTATCATGTGCCTCAAGAACAGTCCATGTTGAGGATGCTGATGGAAAAACAAGGACCAATTGCAAACCAAATTCAGAAACCAGAGTTTTCTGAGGGAAGAGACTTTGATGCTGATATCTCATCTATGATCTACAACAATGACATGATGCACAGAATGTTTGGGAATCAAGAACATTCTTCAGCTTCTGCAGGGCCCGTGGACACTGATTTCCTATGGAATTACTGA 1092 0.4267 MGSMENVSKPRKENQKFELPAGFRFHPRDEELINHYLTKKVVDNCFCAVAIAEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDREIIMENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKHNQPNPGKSEWVICRVFEKSPCGKKMHVLKCGRLNNSSGEEPSSCASLLPPLIDSSPYNSETRTTTAGELSQLTCFSDPNQTEDQNNTHDDIVDSMETPILNFSPSSRPDDASTLAKATLSSASNQSAQIAHQIGNSQFPDYYHVPQEQSMLRMLMEKQGPIANQIQKPEFSEGRDFDADISSMIYNNDMMHRMFGNQEHSSASAGPVDTDFLWNY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1938 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 360 - -
Gso9g1938 363 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Gso9g1938 363 ProSiteProfiles NAC domain profile. 19 166 IPR003441 GO:0003677|GO:0006355
Gso9g1938 363 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 4 360 - -
Gso9g1938 363 Gene3D NAC domain 28 169 IPR036093 GO:0003677|GO:0006355
Gso9g1938 363 SUPERFAMILY NAC domain 16 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1938 Gso-Chr9 43727894 43732023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1938 18 363 NAC Transcription Factor Family AT5G07680 48.997 8.15e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso9g1938 NAM 9.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1938 - - gmx:100782172 748.814