Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1937 ATGGGAAGATCACCATGCTGTGACAAGGTGGGTTTAAAGAAGGGACCGTGGACGCCAGAGGAAGATCAGAAGCTCTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAAAGTTGCAGGTTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGCATGCAAGAGGAGCAAACCATCATTCAACTCCATGCACTATTAGGGAACAGGTGGTCTTCAATAGCTACACATTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACTCATCTTAAGAAAAGGTTAGACAAAATGGGCATTGACCCTGTGACCCACAAGCCCAAGAACGATGCCCTTCTCTCCACCGAGGGCCCTTCCAAGATTGCTGCCAACATCAGCCACATGGCTCAGTGGGAGAGTGCCAGGCTCGAAGCAGAAGCAAGATTGGCCAGAGAATCAAAACTACGTAGTTCTTCACACTCATCATCATCATCATTACACCACACCCTAATTGGCACTTCTGCATCATCATCATCATCACTTTCTCTTGATCATGCTTGGAAAAATGGTGGTAGTACTATTACTATAACTGTTAATGCAACTAGGGTTAGTGACCTTGAGTCCCCCACGTCTACCTTATCTGAGAACAATGTGCCACCAATTAATAATATTACTAGTACTGTGATTGAGTTTGTGGGTTCTTCAGAGAGAAGGACGGTGAAGGAAGAGGGAGATCAAGAGTGGAACAAATTAGGTTATCATGAAAGCTCCACCCATTTGGGAGAGTACAAAGATGGCATGGAGAACTCAATGCCTTTCACGTCTAGTCTACATGAGTTGACAATGACCATGGCAACCACGTGGGGTTCTAGTACTAGTAGTGCACATGAACACGCACATGTTGCTGAGGAGGGTTGTTTCACCAATCTTTTGCTGAATACTAACTCTGGCGGCCACCTGAGTTTGTCACCCGAGGACGGTGGAGAGTCTAATTATTGTCACAATAATGCTGGTAGTAGTGACGCTGGTAGTGGTAACAACGGTGACTTGTACCAAGAGAACAAGAATTATTGGAATAACATTCTTAATTTGATGAATTATTCTTCCCCTTCGGATTCACCAATGTTCTGA 1173 0.4459 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDALLSTEGPSKIAANISHMAQWESARLEAEARLARESKLRSSSHSSSSSLHHTLIGTSASSSSSLSLDHAWKNGGSTITITVNATRVSDLESPTSTLSENNVPPINNITSTVIEFVGSSERRTVKEEGDQEWNKLGYHESSTHLGEYKDGMENSMPFTSSLHELTMTMATTWGSSTSSAHEHAHVAEEGCFTNLLLNTNSGGHLSLSPEDGGESNYCHNNAGSSDAGSGNNGDLYQENKNYWNNILNLMNYSSPSDSPMF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1937 390 CDD SANT 69 112 IPR001005 -
Gso9g1937 390 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso9g1937 390 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso9g1937 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso9g1937 390 MobiDBLite consensus disorder prediction 332 362 - -
Gso9g1937 390 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso9g1937 390 CDD SANT 16 61 IPR001005 -
Gso9g1937 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 385 - -
Gso9g1937 390 MobiDBLite consensus disorder prediction 342 362 - -
Gso9g1937 390 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso9g1937 390 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 385 - -
Gso9g1937 390 Gene3D - 68 134 - -
Gso9g1937 390 SMART sant 13 63 IPR001005 -
Gso9g1937 390 SMART sant 66 114 IPR001005 -
Gso9g1937 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso9g1937 390 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso9g1937 390 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1937 Gso-Chr9 43712666 43716365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1937 1 390 MYB Transcription Factor Family AT3G01140 51.493 1.96e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g1937 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1937 K09422 - gmx:100781637 762.681