Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1933 ATGGAAGGATCATCAGGTGTGAGGAAAGGCACATGGAGTCAAATTGAAGATGATCTTCTCAAAGCTTGCGTGCAACTTTATGGGGAAGGAAATTGGCACCTTGTTCCTAAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTTAAACCAAATATCAAGCGGGGAGATTTCAGTGAAGATGAAATTGATATGATGATCAGATTGCACAAGCTTTTGGGAAACAGATGGTCCCTGATTGCAGGAAGACTTCCGGGAAGAACCTCAAACGATGTAAAAAATTATTGGAACACCTACGCACGCCGTAAATTACACTCTCACAAGAAAGACAACAACATAGAAAAGCAAGCTAGGGCCAAAACAACCGTGAAACCCCACGAAGTTATAAAGCCTGTACCTCGAGCTTTAACAAAAACATCCCCACGGTTGCAAGGGAAATTCATTAATAGTTCAGAAGTTGGTGTTAGTCATGAAGAAGGTGCAACTTCAATATCAGGGTCTGGGAATTGGTGGGAAACTTTTTTAGATGACAAGGAAGACATTGAAGAAGGTAACAACAACAAATGCTTCTTTGGTGGGGAAGATGGAGCACTTGACCTTTGGGGTGAAGAGCTTAATTCAATTGCTTGTGACTTTCTTACACAAGGTGAAACTTGGAGCGATTTTCTTCTTGACCTAGGGCTAGGAGATTAG 714 0.4188 MEGSSGVRKGTWSQIEDDLLKACVQLYGEGNWHLVPKRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDMMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYARRKLHSHKKDNNIEKQARAKTTVKPHEVIKPVPRALTKTSPRLQGKFINSSEVGVSHEEGATSISGSGNWWETFLDDKEDIEEGNNNKCFFGGEDGALDLWGEELNSIACDFLTQGETWSDFLLDLGLGD* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1933 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 145 - -
Gso9g1933 237 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gso9g1933 237 CDD SANT 65 106 IPR001005 -
Gso9g1933 237 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gso9g1933 237 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gso9g1933 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Gso9g1933 237 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gso9g1933 237 CDD SANT 11 56 IPR001005 -
Gso9g1933 237 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gso9g1933 237 SMART sant 8 58 IPR001005 -
Gso9g1933 237 SMART sant 61 109 IPR001005 -
Gso9g1933 237 Gene3D - 9 61 - -
Gso9g1933 237 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 145 - -
Gso9g1933 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Gso9g1933 237 Gene3D - 64 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1933 Gso-Chr9 43663441 43665528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1933 2 183 MYB Transcription Factor Family AT1G66370 46.411 6.94e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g1933 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1933 - K09422 gmx:100780023 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2137 18 54462752 54464586 Gso9g1933 9 43663441 43665528 GST