Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1932 ATGGAAGGATCATCAGGTGTAAGGAAAGGCGCATGGAGTCAAATTGAAGATAACCTTCTCAGAGATTGCGTGAACCTTCATGGGGAAGGAAAATGGCACCTTGTTCCTAAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTTAAACCAAATATCAAGCGGGGAGATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCACAAGCTTTTGGGAAACAGATGGTCCCTAATTGCAGGGAGACTTCCAGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCTACATGCGCCGTAAAGTACACTCTCACAAGAAAGACAACAACATAGAGAAGCAAGCTGATGAGGCCAAACCAATAGTGAAACATCACGAAGTTATAAAACCTGTTCCTCGAACTCTATCAAAAACATCTCCATGGTTGCAAGGGAAATTTGTTAATAGTTCCAAAGTTGGTGTTAGTGAAGAAGGTGCAACTTCAATATCAGGGTCTGCTGGGAATTGGTGGGAAACTTTGTTAGATGACAAAGAAGACAATGCAGTTAATAACAACAACACGTGCTTCTTTGGTGGGGCAGATGGAGAGTTTAACCTTTGGAGTGAAGAGCTTACTTCAATTGATTGTGATTTTGTTACACAAGGTGAATCTTGGAGTGATTTTCTTCTTGACCTACAAGGCTAG 711 0.4121 MEGSSGVRKGAWSQIEDNLLRDCVNLHGEGKWHLVPKRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYMRRKVHSHKKDNNIEKQADEAKPIVKHHEVIKPVPRTLSKTSPWLQGKFVNSSKVGVSEEGATSISGSAGNWWETLLDDKEDNAVNNNNTCFFGGADGEFNLWSEELTSIDCDFVTQGESWSDFLLDLQG* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1932 236 Gene3D - 9 61 - -
Gso9g1932 236 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gso9g1932 236 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gso9g1932 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gso9g1932 236 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gso9g1932 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Gso9g1932 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 158 - -
Gso9g1932 236 CDD SANT 11 56 IPR001005 -
Gso9g1932 236 Gene3D - 64 135 - -
Gso9g1932 236 CDD SANT 65 107 IPR001005 -
Gso9g1932 236 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 158 - -
Gso9g1932 236 SMART sant 8 58 IPR001005 -
Gso9g1932 236 SMART sant 61 109 IPR001005 -
Gso9g1932 236 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gso9g1932 236 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1932 Gso-Chr9 43641326 43642653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1932 2 145 MYB Transcription Factor Family AT1G66370 60.927 4.30e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g1932 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1932 - K16166 gmx:100778957 500.745