Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1920 ATGGATTTTGGAAATGCGGAAAAAACGTGTGATGTTGACTGTGTTGTTGAAAAAGCAAAATCCAGTGGGAGCCACAGAGATACAGTCATCAGTGAGAAAGCCAAAAGGAAGCGCCAATCTGCATTCCGCGGAGTGCGCAAACGCAGCTGGGGACGCTACGTCTCTGAGATAAGGCTCCCGGGCCAGAAAACACGCATATGGCTCGGCTCCTTCGGCTCGCCTGAGATGGCGGCTCGCGCTTATGACTCCGCTGCTTTCTTCCTCAAAGGAACATCTGCCACTCTTAATTTCCCCGACCTCGTACACTCCCTGCCTCGACCTCTCTCATCTTCCCGGAGGGACATACAGTCCGCCGCAGCTGAAGCCGCTCTCCACTCTCCGCCTCCCAAAGAAGAACAAGAATCTATTTTCACTTCCACCACCACCTCGTCCTTTCACGATGTCATGGAAGCTCCTCTTATGAGTCCCCTTAGGGTGGACTCCACTTTCGGAGATTTCTCATGGGACCAACTCTTCGATTTCAACGATGACATTCTCATCGTGGGATCAACTTCTGCCACTCTTGTCCCTTAA 573 0.5201 MDFGNAEKTCDVDCVVEKAKSSGSHRDTVISEKAKRKRQSAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFGSPEMAARAYDSAAFFLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAAEAALHSPPPKEEQESIFTSTTTSSFHDVMEAPLMSPLRVDSTFGDFSWDQLFDFNDDILIVGSTSATLVP* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1920 190 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Gso9g1920 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 140 - -
Gso9g1920 190 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Gso9g1920 190 MobiDBLite consensus disorder prediction 115 139 - -
Gso9g1920 190 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Gso9g1920 190 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Gso9g1920 190 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Gso9g1920 190 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Gso9g1920 190 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Gso9g1920 190 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Gso9g1920 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 23 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1920 Gso-Chr9 43538892 43539544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1920 13 127 AP2-EREBP Transcription Factor Family AT5G11590 53.782 1.30e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso9g1920 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1920 K09286 - gmx:100783790 351.288