Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1917 ATGGTCGTCAACGAGAGACCTTCCAAGAGGATGAAGAGGAGGGTCACAGCTGATCTTTGTGATTTTCTTACTTTTCCGGAGCCTGGCGTCTCTGCCTCCACCGAACCCTTCCGGAACTGTGTACAGCGCTTCCTCTCTCACCATGCGCGCATCACTTTCCCTCCCTCGCTCTTTCCTTCACTCATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCCTTGACGCTCCCGATCTCTCGCCGGCGATAGTCACTCTCGACATTGTCGAGGAAGATGTCACTCGTTCTCGTGCTTCTGTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCGAGCGATGCCGTAGAAGCATATCAAAGACCTTGTTCAAGATGTGGAAATCTTCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAGGATTGGGTGTATCTTCAGATTGAAGATAACACACATCTTCTGCATGGTGTCGTCCATTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGTTCTGATATCATGAATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGGTTGCTTCATGCAATCACCAACGGGCATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCAGCTATGCTCTTACGCAAGATGCGTACAAGAATGCAGTGAATACCCTGTCAAGCATGCCCTTGTCATCATTTTCATTCCACGGTCGGGGACCAAGAAGCCACCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTTTGACGATTGGACATCTCTTCTCCTTTATGTTGACATTGATTCATGAATGTCTTAAGCCAGTGGCCATGAGGACATCTAAGCAGACCAGTAACATGTTGTGTGCATGGACGGGAAATGATGTTGAAGAGGTGCAACATGCTTTGATAAAGGTTTTGCTTGCATCGGGTGCTTGTACTGAGGCTAAATGGGTGACAAGACGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCACTTCCCAGGGAAATTAACTGCCAATGGAATGATAGTTTGTTCACGATGCAATCCCATTTCCAGTGGCATCGAATTCAGATTAGAACCTTGGTGTAATGGATTGAGTACAAAGTCAAGCTATCCAACAGAAGTTCAACTGATCTCTGATTTGACATTTTTATTTAATTCAATTATTCACCCTGACAAAATGGTGTGCTACAGACCAAAGATTATGAGGAAAAGTGTGGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAGGATTACAAGCCGTATGAAATGGCCGTTGAACTGCCTTCAGTCATTAGGCTGTGGTGTCACGTGGAGCTTTCTGATCAGCCCAAGGATGATCCATCCCCACCACCAGAGCTAATTATGCTGCCTTTGAATGCTACCGTTGCTGACCTCAGGAGTGAAGCCACTAGTGCATTTCAAGAGGTGTATGCAATGTACAAGAGGTTTCAAGCTGAGGAACTTCTAGGATACGGGTCAATCAGTGATTCGCTCACCATAAGGTTCTTGCTTGGAACAAGTGGATCAATTCAAATTCAAGGTAAATGTCCAGCTAAACATGGGCTAAGTCGATTTCGAATGGAACGAGGAACAGAGGTGTGGAAGGTGGATTGCACTTGCGGGGCTAAGGATGATGACGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACAAGATGTGCTGGAATTGATAATAATACTGATGGAATGCCTTCTAAGTTTGTTTGTATGGGATGTGTCAACTTGTACCGTGAGGAAACTAAAAAATTACCAGCACCTGGTGAGGAAGCTAACGAGACCTGTAAATTCAACACATCTTGCAGAGATGAAGCTGTAGCAAGGGACTGTGCAACAGTTTCATGTAACATAGCTGTGAATTTTGGTGTGGGTTGA 2127 0.4565 MVVNERPSKRMKRRVTADLCDFLTFPEPGVSASTEPFRNCVQRFLSHHARITFPPSLFPSLMTWQILFRVGDLLDAPDLSPAIVTLDIVEEDVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEAYQRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSDIMNFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITNGHSWYGNWGYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSHLECVISLYQSLAETELLTIGHLFSFMLTLIHECLKPVAMRTSKQTSNMLCAWTGNDVEEVQHALIKVLLASGACTEAKWVTRRALKGAVCRGVSSPELLDYCLKHFPGKLTANGMIVCSRCNPISSGIEFRLEPWCNGLSTKSSYPTEVQLISDLTFLFNSIIHPDKMVCYRPKIMRKSVADSARKLLDCKQFMKDYKPYEMAVELPSVIRLWCHVELSDQPKDDPSPPPELIMLPLNATVADLRSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIRFLLGTSGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNNTDGMPSKFVCMGCVNLYREETKKLPAPGEEANETCKFNTSCRDEAVARDCATVSCNIAVNFGVG* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1917 708 CDD PHD_MMD1_like 611 657 - -
Gso9g1917 708 Pfam PHD-finger 612 658 IPR019787 -
Gso9g1917 708 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 681 - -
Gso9g1917 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Gso9g1917 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 662 IPR013083 -
Gso9g1917 708 SUPERFAMILY FYVE/PHD zinc finger 606 661 IPR011011 -
Gso9g1917 708 ProSitePatterns Zinc finger PHD-type signature. 612 657 IPR019786 -
Gso9g1917 708 SMART PHD_3 611 658 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1917 Gso-Chr9 43517889 43521058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1917 80 657 PHD Transcription Factor Family AT5G22260 27.732 1.10e-82 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso9g1917 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1917 - - gmx:100780558 1450.26