Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1905 ATGACAATGATGGGAAAGACATTATTGTTAACATTGTTATTACTGTCCTCAGTTTTCTCAATTGCCTCATCAAGAAGAAGACATTCCAACAACAACAACATAGATTGGTGGTGCAACCAAACCCCATACCCCGAGCCATGCAGATACTACATAAAACACAGCCACTACCAACACAAACAACTCAAACACAAATCCGAATTCCGCACAATTCTAGTTCACTTGGCCTTGGAGAGAGCAGTGATCATGCGAAGGAAAGCACGTGAGTTGGGGGGAAACGGTGTCACCAAGAAGCAGAAATCAGTGTTCCGTGATTGTTTGAAGCTCTATGACAACACCGTTTTCCATCTAAACCGCACCCTTGAAGGCCTTCACGTGAAGACAAGCTGTTCACCCTTCGATGCACAAACGTGGCTCAGCACGGCTCGCACAAACATTGAAACATGCCAAAACTGGGCCTTAGAACTTGGTATTCGAGATTCCATGGTTCCCGCTGAGAGATGCAATCTGACTGAGATTATAAGCAATGGCTTATTCGTGAATTGGGCTTTCCTGAAGTACAGAGAGGCTCATTACACAGCAGATGCAGAAGAAGATGCATTATTTCCAAGATGGTTTTCGATGCATGAGAGGAAGCTGTTGCAGTCATCTTCAATAAGGGCACATCTTGTGGTGGCTAAAGATGGTTCGGGGCATTTCAGGAGTGTCCAAGCTGCTATCAATGCCGCGGCAAGGAGAAGGTTGAAGAGCAGGTTCATTATACATGTTAAGAGAGGAGTTTATAGAGAGAATATTGAGGTTGACAAGACCAACGATAATGTTATGTTGGTCGGTGATGGCATGAGAAATACCATAATAACAAGTGCCAGGAGCGTTCAAGCTGGTTATACCACCTATAGTTCCGCAACAGCAGGAATTGATGGTCTTCACTTCATTGCACGTGACATTACCTTCAGAAACACGGCGGGTCCTCTGAGGGGTCAAGCAGTGGCACTTCGATCAGCCTCTGACCTCTCCGTGTTCTATCGCTGTGCGATTGAAGGCTACCAAGACACCCTCATGGTCCATGCACAACGACAGTTTTACAGAGGATGTTACATATATGGAACCGTTGACTTCATATTTGGCAATGCTGCTGTTGTTTTCCAAAACTGTGTGATTCTTGTAAGAAAACCCTTAAATGGGCAAGCAAACATGATCACGGCCCAAGGTCGAGATGATCCATTTCAAAACACTGGCTTTTCAATTCACAATTCTCAGATCAGGGCTGCACCAGACCTCAGGCCCATTGTTGGAAAATTCAACACCTTCTTGGGCCGGCCTTGGCAACGATACTCGAGAGTTGTGGTCATGAAATCTTTCTTGGATAGCCTGGTGAGCCCAAGGGGTTGGTCTCCATGGGGAGACTCTAATTTTGCATTGAATACTCTCTATTATGGAGAGTACAGGAACTTTGGGCCCGGTTCTTCCACCAGAAACAGGGTACGATGGCCCGGTTTTCATAGAATAAGTAGCCCAGCTGAGGCATCACGATTCACAGTTGCTAACCTCCTTGCCGGCCGCACGTGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA 1605 0.4636 MTMMGKTLLLTLLLLSSVFSIASSRRRHSNNNNIDWWCNQTPYPEPCRYYIKHSHYQHKQLKHKSEFRTILVHLALERAVIMRRKARELGGNGVTKKQKSVFRDCLKLYDNTVFHLNRTLEGLHVKTSCSPFDAQTWLSTARTNIETCQNWALELGIRDSMVPAERCNLTEIISNGLFVNWAFLKYREAHYTADAEEDALFPRWFSMHERKLLQSSSIRAHLVVAKDGSGHFRSVQAAINAAARRRLKSRFIIHVKRGVYRENIEVDKTNDNVMLVGDGMRNTIITSARSVQAGYTTYSSATAGIDGLHFIARDITFRNTAGPLRGQAVALRSASDLSVFYRCAIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRKPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPIVGKFNTFLGRPWQRYSRVVVMKSFLDSLVSPRGWSPWGDSNFALNTLYYGEYRNFGPGSSTRNRVRWPGFHRISSPAEASRFTVANLLAGRTWLPATGVPFTSGL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1905 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 181 IPR035513 -
Gso9g1905 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Gso9g1905 534 PANTHER PECTINESTERASE 5 533 - -
Gso9g1905 534 Gene3D - 215 534 IPR012334 -
Gso9g1905 534 SUPERFAMILY Pectin lyase-like 218 533 IPR011050 -
Gso9g1905 534 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Gso9g1905 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Gso9g1905 534 CDD PMEI-like_3 36 180 - -
Gso9g1905 534 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
Gso9g1905 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 5 533 - -
Gso9g1905 534 SMART PMEI_2 29 179 IPR006501 GO:0004857
Gso9g1905 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 180 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1905 Gso-Chr9 43442777 43445253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1905 29 534 Carbohydrate Esterase AT3G47400 59.459 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1905 K01051 - gmx:100816908 1062.75