Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1900 ATGAATACTTTTACTCATGTCCCCCCCGGTTTCAGGTTCCATCCTACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAATTGCTTCAAGGAGGATTGATCTAGATGTGATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAGCAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCCAAGCACGAGCTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCTCCAAATGGACAAAAGTCAGATTGGATAATGCACGAGTATCGGCTTGAAACAGATGAAAATGGCACTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCATGACTCCTCCTGTTGGTATGATGAGCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAACTTGTCAATCTAATTTGGTCTACCAGCAGCTACCATATCCTTGCAAGAAAGAGCTAGATTTGCCGCCATACCAATTGCCTCGTGACCACTTCCTCCAGCTTCCACTTCTAGAGAGCCCAAAACTGCTTCAATCTGCTTCTGCCATAGCACCTATTAATAATCCCATGGAAGGATATGTTCTAGACCATGTAAACCACTCAACTTCTCTGCTTCCCCCATCACTCATACAACAAGAACATGTTGGTCAGCAAAACTTTCAGGCAACCTATGGCAACATTAACAATTCCAATGAACAAGCAGTGGATCCAGTGACTGATTGGCGAGTGCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGCTTCCAAAGAAAATATCTTTCAAGGCACGGACAATAGCAGTGTACAGTTCAGACATTTGGACAAACAAAAGCTAGTGGTGCCTGAACAAAATGCATCAACATCAAACTCCAGCTGCCCAATTGATTTGTGGAAATAG 1065 0.4225 MNTFTHVPPGFRFHPTDEELVDYYLRKKIASRRIDLDVIKDVDLYKIEPWDLQEICRIGAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTMRKVSEHDSSCWYDEQVSFMQDLDSPKQTCQSNLVYQQLPYPCKKELDLPPYQLPRDHFLQLPLLESPKLLQSASAIAPINNPMEGYVLDHVNHSTSLLPPSLIQQEHVGQQNFQATYGNINNSNEQAVDPVTDWRVLDKFVASQLSQDASKENIFQGTDNSSVQFRHLDKQKLVVPEQNASTSNSSCPIDLWK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1900 354 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Gso9g1900 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 335 - -
Gso9g1900 354 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gso9g1900 354 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Gso9g1900 354 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Gso9g1900 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1900 Gso-Chr9 43404054 43408920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1900 1 354 NAC Transcription Factor Family AT1G12260 56.948 4.85e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso9g1900 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1900 - - gmx:100815845 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1900 9 43404054 43408920 Gso9g1900 9 43404054 43408920 ECH