Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1899 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCTGTGCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTCATTGAGAGGTACATGAAGTTCACACGAGGGGCTCAGCCTGAAGCAGCAGCACCTGAAGCACATCCTCTTCTGGAAATGCCGTTACAGGATGCCCATAAAACAATTAATGGAGAGTTAAAGGTTGCTAAAGAGGAAACTAACGCGCTAAAACAAGAAATCCAAACATTGCAAAAGGGTATCAGTTATTTGTTTGAAGGAGGAAATAAGACTATGGCAATTGATGAATTACAACTGCTAGAGAAGAATCTCGAAACTTGGATATATCATATTCGTTCAATGAAGATGAACATTATGTTACAAGAAATTCAAGCTTTGAAAGATAAGGAGGGAACACTTAAAGCGGCAAATAAATATCTCCATGACAAGATTGTGGAGAATACTGCGATTTCTAACTTTGCTGAATTTGCTACTGATACTTCTTACCCACTAATTGTACAAGATGGGGGTTTTCAACTCTATTAA 660 0.4197 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMKFTRGAQPEAAAPEAHPLLEMPLQDAHKTINGELKVAKEETNALKQEIQTLQKGISYLFEGGNKTMAIDELQLLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAISNFAEFATDTSYPLIVQDGGFQLY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1899 219 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Gso9g1899 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso9g1899 219 Pfam K-box region 107 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso9g1899 219 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Gso9g1899 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso9g1899 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 - -
Gso9g1899 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso9g1899 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso9g1899 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso9g1899 219 Coils Coil 98 125 - -
Gso9g1899 219 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso9g1899 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gso9g1899 219 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso9g1899 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1899 Gso-Chr9 43394420 43398303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1899 1 218 MADS-box Gene Family AT1G71692 59.459 2.57e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso9g1899 K-box 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1899 - - gsj:114367288 429.869