Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1897 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCCCATACTGGGACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTGTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTGGCCTTGGGTTTGCATCATCTGATTCTGATACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCAGCACTTACATCTTTTGATCAAATCACAAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCTGTTAAGAAGGTGGCAGAATATTTTCCAACGGCAATAATTAGTGGAAGAAGTCGTGATAAGGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGGTACTTAATTCTCTTGAAGAGTGTACAAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGAATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCACGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGCAAAGCTGTCACGTTTCTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAG 1170 0.4068 MDLKSNHTPVLTDAAPVTKSRLGVHSSLLPYSHTGTTFTHGMLLTIPRKKTGILEDVRCSGWLDAMKSSSPPARKITKDVGLGFASSDSDTAGAYFSWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHLNCIRSTDKQGKEVNLFQPAAEFLPMINEVLNSLEECTKDIKGAKVENNKFCVSVHYRNVDEKYWNLVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSTLKSLI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1897 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Gso9g1897 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Gso9g1897 389 Gene3D - 219 387 IPR023214 -
Gso9g1897 389 Gene3D - 121 213 IPR023214 -
Gso9g1897 389 CDD HAD_TPP 122 372 - -
Gso9g1897 389 TIGRFAM T6PP: trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Gso9g1897 389 Coils Coil 229 249 - -
Gso9g1897 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Gso9g1897 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 341 IPR006379 -
Gso9g1897 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1897 Gso-Chr9 43380364 43386291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1897 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.429 1.89e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1897 K01087 - gmx:100775207 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1897 9 43380364 43386291 Gso9g1897 9 43380364 43386291 ECH