Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1888 ATGGGGGAATCCAGTTCTAGGGTTTCCCACACTCTTCATCAACCCACCGCAGGCATCGTCAAGCGACTTCGACTCGAGAACTTCATGTGCCATTCCAAACACGAGACCGAGTTCGGAAACCACGTCAATTTCATCACCGGTCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGAGCCAAAGGGACTCAAAGGGCTTCCACTTTGAAGGATTTCATTAAAACTGGCGCCACTACTGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAACCTGAAATATATGGTCCTGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGTTCTACTACTTTAAAAGATCACCAAGGAAGGAAGGTTGTCAGTCGGAAAGCAGATCTTCTAGAAATCGTTGAACATTTTAATATTGACGTGGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAGGATAAATTTAAGTTCTTTTACAAGGCCACGCTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAATGAAATAACTTCTGCACAATTAGTAGTTGAAGAATTAGAGACTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAATATGGAACATGTTGAACAAATATCCATACAGGTTCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATCATGTGGATGAGCAACTGGAGCAACAAAATGTAAAGATTGAAAAGTTGAAGAATCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATTTAGTTGAAAAGTTGGAGGAAATCTGGTCCAAGAAGAAAGAGGAAATTAAAAGTATGTTTGCAAAGACATCACAAGTTAATCAAATGAAGGAAAATTTAAACCAGTCTGTGTCCATGGCAAAGAAAGAGGCGTTTGAACTTGAGCGAGACTGCAAATGCAAAACCAGCAACATACAGAAGATGGTTAATCAACTTGAAAAGCTTAAAAAACAAGTACAGGATATCCATGATCAGCACGTAAAAAATTCTCAGGCTGAAGAATCTAACATGGAGGAGAAACTGAAGGGGCTTAAAGATGAGGTTCATGCAGCTGAGTCAAAGCTGAAGAGATTGCAAGAAGAAGAAGCTTTGTTACTGGATAACATACATAGGCAAAAGGATGAAATCCGAAAGATAGCTGATAAGATCGATGATCATGAAAAAAGTTATAAAGATTTGATGTGTCAAATTCGTGGTCTTCAACAAAATCAAAGCAATAAGATTACTGTTTTTGGAGGAAATAAAGTGTTAGATTTGTTACGTATAATTGAGAACTACCACCAAAGGTTTAAGATGCCTCCAATTGGTCCCATCGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCGTAGAACATGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTGATCATGCGGATTGTCGTCTTCTGAAACAATGTGCGAAGGAAGCACACTTTGGTCACCTTCAAATTATTGTTTATGATTTTTCAATCCCAAGGTTGACGATACCACAGCACATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGAGAATCAAACTGTGATTAATGTCTTAGTGGATCATGGAAATGTTGAGAGACAAGTGCTTGTTAAGGATTATGAAGTTGGGAAAGTGGTTGTCTTTGACCGAAGGATTCGAAATTTGAAGGAGGCCTATACAGAAGATGGATGTAGAATGTTTTGTCGAGGTCCAGTGCAGAATTTTCTTCAACCAAATATGAGGCGAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTAAGAAACTTCATGCTGAAGCGTCTGATGTAAAAAATGAAGCCAATGGCTGTAAAAATATTAAAAGAAAGGCAGAGATCAAGCTTGAGGAGCTTGACAAGAATATGAATTCTATCAAGAGGCAATGTGTAGATGCAGATAAAAGTTTAACTTCTAAGAAGCTAGTGTTGGAGCAGGAAGAAATGGATTTGTACACTGCTAAAAATAGTGCAACACCTTTATCCTCTGTTGATGAGCTCATTGAAGAAATTTCAGAGATCCAGAAAAAAATAAAAGACGAGAAAGTCTTGTTGGAAGGCCTTCGGCAAAAGGAGTGTGAAGCAGCAGGAAAAGCAGATGATCTTAAAGTCAAATTTGACAAACTGTGTGAATCAGCGAATGGTGAATTTGCTTCCTATGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGATTCAGCAAAAAAGGCAAAGGATCATTATGAGGGTATCATGAAAAACAAGGTCCTACTTGATATTGAGGAGGCAGAGGAACACTATCTGGAGCTTACAAAGATGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATTTGCTCCCTGAATGAACTTGATTCATTAAGCGGTTGTGAAGGGAATACCCCAGAGCAAATCAGTGCACAATTAGAAAGACTAAATCAGACAATTAGGCGTGAGAGCCAAAGGTACTCTGAATCAATCGATGATCTCAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTATAAAAAGGCAGCAAGTTTACAAAACTCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTAGAGTTACGAAAGAGAAAGTTTCAGAGAAATGCAACTTATCTGAAGCACCAGCTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAACTATGAAGATAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACAGAGCTGTTCGAGACACTAGGGGGCTTTCAGGTGGCGAGCGCTCTTTTTCAACATTGTGCTTTGCATTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACCCTAGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATTACTCCGCATGATACTAGCTCGGTGAGGGCAGGGGACAGGATAAAGAAGATGCAAATGGCCGCTCCACGTTCTTGA 3174 0.3945 MGESSSRVSHTLHQPTAGIVKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGATTAVIQVEIQNEGEDAFKPEIYGPVIIVERRISESTSSTTLKDHQGRKVVSRKADLLEIVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNEITSAQLVVEELETAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAWSWVYHVDEQLEQQNVKIEKLKNRIPTCQAKIDQQLHLVEKLEEIWSKKKEEIKSMFAKTSQVNQMKENLNQSVSMAKKEAFELERDCKCKTSNIQKMVNQLEKLKKQVQDIHDQHVKNSQAEESNMEEKLKGLKDEVHAAESKLKRLQEEEALLLDNIHRQKDEIRKIADKIDDHEKSYKDLMCQIRGLQQNQSNKITVFGGNKVLDLLRIIENYHQRFKMPPIGPIGAHLKLLHGNKWALAVEHAIGRLLNSFIVTDHADCRLLKQCAKEAHFGHLQIIVYDFSIPRLTIPQHMLPDTEHPSILSVLQCENQTVINVLVDHGNVERQVLVKDYEVGKVVVFDRRIRNLKEAYTEDGCRMFCRGPVQNFLQPNMRRRTGRLCGSFEDEIKKLHAEASDVKNEANGCKNIKRKAEIKLEELDKNMNSIKRQCVDADKSLTSKKLVLEQEEMDLYTAKNSATPLSSVDELIEEISEIQKKIKDEKVLLEGLRQKECEAAGKADDLKVKFDKLCESANGEFASYEKAESELVEIEKEMDSAKKAKDHYEGIMKNKVLLDIEEAEEHYLELTKMRKESVEKASIICSLNELDSLSGCEGNTPEQISAQLERLNQTIRRESQRYSESIDDLRMLYKKKERKIIKRQQVYKTLRQKLDACQRALELRKRKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEDKTLMIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSSVRAGDRIKKMQMAAPRS* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1888 1057 Pfam RecF/RecN/SMC N terminal domain 20 1052 IPR003395 -
Gso9g1888 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 1050 IPR027417 -
Gso9g1888 1057 Coils Coil 316 364 - -
Gso9g1888 1057 CDD ABC_SMC6_euk 20 174 - -
Gso9g1888 1057 Gene3D - 845 1054 IPR027417 -
Gso9g1888 1057 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 9 1057 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Gso9g1888 1057 Coils Coil 253 280 - -
Gso9g1888 1057 Coils Coil 366 442 - -
Gso9g1888 1057 SUPERFAMILY Smc hinge domain 426 596 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gso9g1888 1057 Coils Coil 715 742 - -
Gso9g1888 1057 Coils Coil 193 234 - -
Gso9g1888 1057 Coils Coil 771 798 - -
Gso9g1888 1057 Gene3D - 19 218 IPR027417 -
Gso9g1888 1057 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 1057 - -
Gso9g1888 1057 Coils Coil 855 875 - -
Gso9g1888 1057 Coils Coil 807 827 - -
Gso9g1888 1057 CDD ABC_SMC6_euk 961 1057 - -
Gso9g1888 1057 Coils Coil 632 687 - -
Gso9g1888 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 1047 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1888 Gso-Chr9 43261518 43279362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1888 14 1057 Structural Maintenance of Chromosomes family AT5G07660 57.088 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1888 K22804 - gmx:100816916 2045.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1888 9 43261518 43279362 Gso9g1888 9 43261518 43279362 ECH