Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1872 ATGAAGAGATTGAGGTCGAGCGAGGATCTCTACTCCTACGGCGGAGATAAGAGTAATAATAGTTGCAAGGATTCGAACAATCTTAACCGTTCGTTTTCGTCGGCGCAGCGGAGCTTCTACTACAAGCAGGAGAATGCGCGCAAGGGTTTGGTCTCGTCGTCTTCGTCGTCGTCATCACGGTACGAGAGGGATCGAACGGTGGAGGAGGATCGGGAGGGTTCGCGGCTGGTTCGGAAGCGATCGGAGCACGATTTCGAGGGTTTCGATCGGAGGAAGGGGTTCGATCGGTACAGGGAGAGTGACCGGAGTTTGATTCACCGGTCGGAGAGTTTCTGCGGCGGTGGAGGGTTGCGGAGGGATCAGTTTCCGAAGGGGTTTCGGTCGGAGAGGGAGCGATCGCGGAGGGAGGGGAGCGTGTCGTCGTGGCGGCGAGGGTTGAAGGATTTTGATGATAGAGAGAGGGTGGTGCGTTCTCCCAAGGGTTTGAGGGATGTGAAGTCTCCGTCGTGGTCGAAGGATTCTGTTTCTGAGAGCGAGCAATCGAAGAAGAGGTCTTCTTCTTCTCCGAGACCATTCAGAGATGGTAACTCCGTCAAGTCTAAGTCCAAGTCTCCCACTTGGTCCAAGGATTCGGAGAGCGAGCTGTCCAAGAGTGTTGAGGTGAAGAAGGTTGAGGAGGAGTTGTTGCAGCAGGTTCAGAGTGGGAGTGGGAGTGGGAGTGGTAGTGAGATGGAAGAAGGGGAGCTTGAGCCTGAACCCCAAGCGGAAACGGTTCCTCCTGTGACTGAAGGCCTGCCCTCTGTTGCTATGGAGACTGATGAGAAGCAAGTTCAGAAGAATGAATGCCACCCTAATGATGGTGACACTGATGCTGCTGTGGAGGAGGAAGGGAAACCTAACGAGGAGGATGGATGTTGTGAGGTAAAGGATGGAGAGAAGAAGAAAGAAGCTGATGAGATGGCAGATGTTCGGGATGATCAGACTGAGAAAATGCTTGTGACTGAGACTGAAGTTGAGTCTGTGGGTAATGGTGATGATGATAAAAAGGAGGAGGCTTTGGATGCTGGTGCTGAGTATGAGGAGGAAACAAAGAAGGGTGCGTGTGTGGAGGAGGAGAAGGAGAAGAAGGTGGCGTTGAATGAAGAGGAGGATAAGAAGGACAAGGGCAAGGACAAGGACAAGGACAAGGGCAAGGGTGTAGATCTAGGAACCAGCACGGATGTTCTCAAACCTGAGTTAAATGATGTAGTATCGACAGGAAATGAGGTTCCAAAGGAAGTGGATAGAGAAATGATGATGGAGAATGTGATCAATATTGCAAAGGATAAAGGCAAAGGTGTCTCTGTTGCACTTGTACCTCCTACTGATGTTGTTCATGCTTTAGATGATGGCTTGTGGTTGGATAGAGAGTCGAGAGACCTCCTGACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACAAGGGGATTCGAGTTGTTTTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTAGACCACTCAGTTCTCAACAAGCACAAGGATGACATGGAGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATTGGTGCTCATGAGACAACATCGCAAATCCCTGGATCCCCCAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCGATGTCCTTTTCAGGTTCCCAATCATTCTATCATAATCCAAGCTGTTCTCTGACAAAAAATTCAGTGGACTATGAACAATCTGTTGGCAGTCGCCCCTTATTTGGGGGAATAGATCAAGTTTCCCAGGGATGTTGGCAAGGTCAGTCTCAGAGCGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAAAGAACCTCGGCGAATGGAAATGGCTCCCTTTTCCAGTCTCAGGCATCATGGGGTGTTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGGGTTCTAGAAGGAAGTTCAAAAATGGGCAGTGGACTTGACAGGCAATTGAGTTTTCATAAGCAGTTTTCAGGCCAGTCAAGACGCCATGATGATGTTAGATCTCCGTCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTATAGCTTTGAGAAAAAGAGAGAGGTAAGAGACAGGGGTAGTGGTAGTCTGTATCGAACTACCGGCCAGAAGGAACAAGAGCAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCAAGCAATGTCTAGAAAGTTTCATGAAATGACCGGACAGTCCATAGTATGTCTGAAGGAGGGTATTCGTGAAATCATGCTTAATGCAGATAAGCATGGGCAGATACTTGCTTTTCAAAAAGTTCTGCAGAACAGGTCTGATATAATCTTGGATGTCCTATTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTGACTCATTTTCTTCACCTGGAGAGCAGCATTTCATCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGTAAGAATCTTTCATGTCGAAGTCAGTTGCCTGTGGACGAATGTGATTGCAAGGTTTGTGCAAAGAAGAATGGTTTTTGCAGGGAGTGTATGTGCCTTGTGTGTTCAAAGTTTGATAATGCCTCAAATACATGTAGTTGGGTTGGATGTGATGTTTGCCTTCACTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGACCGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGAATGGTCAGTTGAAACACTTTGCAAAGAGCTTGAATATGTAAAAAGAATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACGGTTGCATGAGATTGCAGAGCAAATGCTGCCAAGGTTGGCAAATAAGTCTAATCTCCCTGAGGTTTTGAGGCACATCATGTCTTTTCTTTCGGATGGTGATTCTTCCAAATTACCCATGACAACAAACTTTTCTGGGAAGGAACAAATTAAAGAAAACAATGGAGTAGCTGGGCCCAGCCCGGAAGCAGCTTGGATGAAATCTATTTATTCAGAAAAGCCACCTCTGTTAGAAAGGCCTGCAAATATCCTTCCTACCTTCGACCAGAATGATAAAAGAACTCTTGTGCAAGAATTTCAGATGAGTAGTATCCAGAAGGACTTCTGTTTTGATGAATTGGAGAGTATAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAGCTCATTGCCCTTGCCAAGAATGAGAAAATTGAGGAAGAATATACCAATAGAATTGCCAAGTTGCGATTGACTGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATCTGGAGTATTTGAACATGAAAATGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACCAAAACGAGCCTTGCCATGTGA 3603 0.4546 MKRLRSSEDLYSYGGDKSNNSCKDSNNLNRSFSSAQRSFYYKQENARKGLVSSSSSSSSRYERDRTVEEDREGSRLVRKRSEHDFEGFDRRKGFDRYRESDRSLIHRSESFCGGGGLRRDQFPKGFRSERERSRREGSVSSWRRGLKDFDDRERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSSPRPFRDGNSVKSKSKSPTWSKDSESELSKSVEVKKVEEELLQQVQSGSGSGSGSEMEEGELEPEPQAETVPPVTEGLPSVAMETDEKQVQKNECHPNDGDTDAAVEEEGKPNEEDGCCEVKDGEKKKEADEMADVRDDQTEKMLVTETEVESVGNGDDDKKEEALDAGAEYEEETKKGACVEEEKEKKVALNEEEDKKDKGKDKDKDKGKGVDLGTSTDVLKPELNDVVSTGNEVPKEVDREMMMENVINIAKDKGKGVSVALVPPTDVVHALDDGLWLDRESRDLLTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNKHKDDMEQLDLTLSLPNVLLPIGAHETTSQIPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFGGIDQVSQGCWQGQSQSDPKQKEVPFGQRTSANGNGSLFQSQASWGVLDSQAVKGQHSRVLEGSSKMGSGLDRQLSFHKQFSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRGSGSLYRTTGQKEQEQLLMGGVDFVETIIARIVSEPVQAMSRKFHEMTGQSIVCLKEGIREIMLNADKHGQILAFQKVLQNRSDIILDVLLKCHRVQLEILVALKTGLTHFLHLESSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCAKKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVETLCKELEYVKRIFSASKDMRGRRLHEIAEQMLPRLANKSNLPEVLRHIMSFLSDGDSSKLPMTTNFSGKEQIKENNGVAGPSPEAAWMKSIYSEKPPLLERPANILPTFDQNDKRTLVQEFQMSSIQKDFCFDELESIVKIKQAEAKMFQSRADDARREAEGLKLIALAKNEKIEEEYTNRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKMRMETDIKDLLSKMEATKTSLAM* 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1872 1200 MobiDBLite consensus disorder prediction 341 401 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 708 722 - -
Gso9g1872 1200 PANTHER PROTEIN OBERON 4 1 1199 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 190 204 - -
Gso9g1872 1200 Pfam PHD - plant homeodomain finger protein 852 972 IPR032881 -
Gso9g1872 1200 Pfam Coiled-coil region of Oberon 1072 1188 IPR032535 -
Gso9g1872 1200 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1199 IPR004082 -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 43 82 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 205 227 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 108 406 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 612 637 - -
Gso9g1872 1200 CDD PHD_OBE1_like 882 938 - -
Gso9g1872 1200 Coils Coil 1101 1121 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 12 29 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 681 729 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 274 333 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 61 82 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 43 60 - -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 122 161 - -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 763 785 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 802 817 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 817 832 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 843 864 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 889 909 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 959 978 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1095 1115 IPR004082 -
Gso9g1872 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1134 1156 IPR004082 -
Gso9g1872 1200 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1872 Gso-Chr9 43136878 43142559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1872 852 997 PHD Gene Family AT5G57380 27.397 1.10e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1872 - - gmx:100807816 2219.89