Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1859 ATGGGATACCTCTACCTTTCTTGCAGAGCTGAATCCGCTGTCTCAACCTCCAATTCGGTGTCCTCTTCCAAAGAGAATGAGAAAAGCAGCAGCATCAAGATCCAAGAGTTTCAGTACAGTGACCTCGAAGCTGCCACCAATGGCTTCTCCGACCGCAAGCTCCTCGGCAAAGGGAGCCACGGCTACGTCTACAAAGCCGTCGTCCGCGGCCGTCCCGTGGCGGTGAAGCGTCCATCGCGGCCACACCATAATGTTCCCCGACCGGTCTCTTCTTCCGCACCCTCCGAGATCACAAACGAGGTCGACAACGAGATCGACATCTTGTCCAAAATCCAGAGCCCGAGGTTGGTCAATCTGGTCGGTTTCACCAATAATGATTCAAGAGACAGGCTTTTGGTGGTTGAGTTCATGAGCAATGGCACCCTCTACGATGTTCTTCATACCTCTCCAAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTTTGCAAACCGCAAAAGCCATTGACACTCTTCACTCCTCAACCCCTCCCGTGATTCACCGTGACATCAAATCTGCCAATGTTCTCATCGACCGCAGCTACAATGCAAGGTTAGGTGATTTTGGTTTGGCCTTAAGAGGCCATGTTGATGATTACAGACTCAGGTCCACTCCTCCTGCTGGCACCATGGGATATCTTGATCCTTGTTATGTCACTCCTGATAATTTAAGCACCAAAACTGATGTTTTTAGTTTTGGGATATTGCTGTTGGAGATTATAAGTGGAAGGAAGGCCATTGATATCACTTATTCACCTCCTTCTATTGTGGATTGGGCTATTCCTCTTATTAAGAAGGGGAAGTTGTTGGCTGTTTATGATCCTAGAATAGCACCCCCCAAGGATCCGATTGTGAGGAAGCAGTTAGCTGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGAAGGCCTTCTATGAAGGAGGTTGTTACTTGGCTTTGTGGGTTGTGTAAATTGGTGCCTCTTCATTCGTGGAATGGTTTTAACAATCCTTGCATGATGGTTGAGACTGCGGGGTGCCCGGTCGAAGCAGCGGCGGCAAGGAATAATGGTCAATTCAGTTCTAGGCTGGAAGGTGTGGAGGAAGGAAAGTTTGATGCTTTGGATGGCAGGTTGTCAAAGTCTGCAATGAGGTATTCTAGGAGGGTGTATTCTGATTTGGGGTTCAGCCGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTTAGAGATGCTGATGGGACGGAACATAGTTCTAAATCAGCTGAACAAGTTTCTGGTAGCTCCAGCAGGTTTGGAAGTGGAAGATATTCCATAAGAGGGAGGAATCTGTACCGGCCTTGTGGGAGTGACAAGGATGCATTTGGCTTGAGTAAAGGCCAGATTTTAGGTCAGAGTGAGACTACTTCCAAACAGGATGGGGTTTCTGGTTCGAATTCGAAGAATTTGAATTCTGTTGCTGCTGAGGTTATCTAG 1509 0.4838 MGYLYLSCRAESAVSTSNSVSSSKENEKSSSIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHNVPRPVSSSAPSEITNEVDNEIDILSKIQSPRLVNLVGFTNNDSRDRLLVVEFMSNGTLYDVLHTSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPIVRKQLAVIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWNGFNNPCMMVETAGCPVEAAAARNNGQFSSRLEGVEEGKFDALDGRLSKSAMRYSRRVYSDLGFSRNLMDLMATTEEPEFLRDADGTEHSSKSAEQVSGSSSRFGSGRYSIRGRNLYRPCGSDKDAFGLSKGQILGQSETTSKQDGVSGSNSKNLNSVAAEVI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1859 502 ProSitePatterns Protein kinases ATP-binding region signature. 55 76 IPR017441 GO:0005524
Gso9g1859 502 Gene3D Transferase(Phosphotransferase) domain 1 137 335 - -
Gso9g1859 502 Pfam Protein tyrosine and serine/threonine kinase 53 325 IPR001245 GO:0004672|GO:0006468
Gso9g1859 502 MobiDBLite consensus disorder prediction 423 445 - -
Gso9g1859 502 SUPERFAMILY Protein kinase-like (PK-like) 28 327 IPR011009 -
Gso9g1859 502 PANTHER OS01G0750732 PROTEIN 1 466 - -
Gso9g1859 502 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN 1 466 - -
Gso9g1859 502 ProSiteProfiles Protein kinase domain profile. 49 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1859 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gso9g1859 502 Gene3D Phosphorylase Kinase; domain 1 19 136 - -
Gso9g1859 502 MobiDBLite consensus disorder prediction 76 95 - -
Gso9g1859 502 SMART serkin_6 49 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1859 502 MobiDBLite consensus disorder prediction 430 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1859 Gso-Chr9 43002036 43004180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1859 37 327 Receptor kinase-like Gene Family AT3G59420 45.118 6.14e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso9g1859 PK_Tyr_Ser-Thr 4.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1859 - - gmx:100805692 927.932