Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1793 ATGAAGAGCGTAAACGACGACGCTTCAACCCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAGCTCACCCCCAACCCCACCCTCAGCCCCGCCGTCCTCGGGGTTTCGCGGCGGCAGCGGCGGCGGCCACCACCAATTCCGCCGGCAAGGGGAAGAAGGAGAGGGAGAAGGAGAAGGAGCGCACCAAGCTCCGCGAGCGACACCGCCGAGCCATCACCAGCCGCATGCTCGCCGGACTCCGCCAGTACGGTAATTTCCCCCTGCCAGCGCGTGCCGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGACGGCACCACCTACCGCCAGTGCCCCCCTCCTTCTCACATGGGGTCATTTGCGGCTAGATCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTAAGGAATTGCTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCGAAGACTGAGAAATATACAAATGCTAGCCCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATAACTTTACTGGCACACCATATGTTCCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATAAAGCAGGAGCTCATCCATATCAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCACAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAACTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTAATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAAGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTTTGATTTCTGCTGTGGAGGTTGGACTTGGAGCATCTGGAGAGCTAAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAGCATAGTCTGCGCAGAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACACTTGCTTTCGAGGAAACAAAGATAACTGTCAAGGTTCCCGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCTGCAGAGTTGACAGCAGGATATCACAATCCAACAAATCAGGATGGATATTCTCCTGTGTTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGATTGATCCAGAGGGTTTGAGTTGGCAGGTGCTAAACTCAGCTTGGGATCGCGGGTTGATGGCTGCTGGAGAGAATGCACTCCTTTGCTATGATAGAGAAGGGTACAAGAAATTGGTTGAGATTGCGAAGCCCAGAAATGACCCCGATCGCCGACACTTCTCATTCTTTGTTTATCAGCAACCATCTTTGCTGCAGACAAATGTTTGCTGGTCCGAACTGGATTTCTTTGTCAAATGCATGCATGGTGAGATGACAGATCTATAA 1965 0.4677 MKSVNDDASTQDLDPQSDHSSDYLAHPQPHPQPRRPRGFAAAAAAATTNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAARSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKTEKYTNASPINTVDCLEADQLMQDIHSGVHENNFTGTPYVPVYVKLPAGIINKFCQLIDPEGIKQELIHIKSLNVDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIIREFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKITVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAAGENALLCYDREGYKKLVEIAKPRNDPDRRHFSFFVYQQPSLLQTNVCWSELDFFVKCMHGEMTDL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1793 654 MobiDBLite consensus disorder prediction 52 69 - -
Gso9g1793 654 Pfam Glycosyl hydrolase family 14 240 621 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 MobiDBLite consensus disorder prediction 1 69 - -
Gso9g1793 654 Gene3D Glycosidases 213 654 - -
Gso9g1793 654 SUPERFAMILY (Trans)glycosidases 217 651 IPR017853 -
Gso9g1793 654 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g1793 654 Pfam BES1/BZR1 plant transcription factor, N-terminal 52 199 IPR008540 -
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 257 271 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 278 296 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 321 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 393 415 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 466 485 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 500 516 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 517 528 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 535 558 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 573 595 IPR001554 GO:0000272|GO:0016161
Gso9g1793 654 PANTHER BETA-AMYLASE 8 57 652 - -
Gso9g1793 654 PANTHER - 57 652 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1793 Gso-Chr9 42384275 42390235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1793 12 653 Glycoside Hydrolase AT5G45300 65.970 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gso9g1793 Glyco_hydro_14 8.2e-88 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1793 K01177 - gmx:100777004 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1294 1 49381429 49388362 Gso9g1793 9 42384275 42390235 GST