Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1792 ATGGGGTCCAGTGCCAGCAAGGCCTCGTCCTCATCGTCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGATACCGAGGTTTCCCATCGTATTGTCTGGGAGCCACGTCTGGATCTCGTGGCATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGATGATGTAACATACAGCAGTGGCAATGAAATAGATTCAGATGAGGGGAAGACAGAGTCTTTTAGAAAGGTTAAATCTGATGAAGTGCCTTGTGTGCCTTCTAACATTGACCTTGAGGGGTGGGGTCACACTACATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCTTCAAGCCGATTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGTTTCTTCAGAGAGTCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCCTCCAGGGCTTCCTGGCAGCTTGATCAATAGAAATGAAACTCAACACCGTAGTGACTTGCTTAATGCATCTCTTGCTAGTCAAGTGCCTATACAGTGTCATCAAGAAGCTTCCAATAATTTAAGATCCAATACCCCGACACTGGTTTCCCCTGGCAACTTGGTTAGCAGTCGCACACTTTCTTCTGTTCAGGATGTTGCCAGAGATGGAAATGGTACAAGAGAAGTGCTGGATGTGAACTTGTTTTCTCCTAGAATTCATACTGATTCAGAAAACATTGAGCCTAGACTTACTGATAGACGAAATGGAGCTCGAGAGCCTGTTGAACGTAATGTTCGTTTTAGCCGGACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTCCGCCGATCAACAGTATCAGACTTCACATTTTGCCCTTTGCAACGAGAGAGAGATGCTAGTCAAGATAATGGAAGACGGACAGGGGAGAGAGACACAAGAGTGTCACCATCTGGTCGTAATGCTGCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCGAAGATTATGAAGTTGAGACTTCACAATCTAGAGAAACTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTGCATGCAGAATCAATAGTCGTGATACCAATTCAAATGATGATACCAATGCAAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCTTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCACTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1704 0.4466 MGSSASKASSSSSSSSSGSFRKGRSKGYRGFPSYCLGATSGSRGIDSDDQVCDQNKVNGDDVTYSSGNEIDSDEGKTESFRKVKSDEVPCVPSNIDLEGWGHTTSRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSESLSIFNNEDELNLPPGLPGSLINRNETQHRSDLLNASLASQVPIQCHQEASNNLRSNTPTLVSPGNLVSSRTLSSVQDVARDGNGTREVLDVNLFSPRIHTDSENIEPRLTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTVSDFTFCPLQRERDASQDNGRRTGERDTRVSPSGRNAANSSTPRYPLPSTPSSLFGIEDYEVETSQSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRINSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICVSDSLPREN* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1792 567 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Gso9g1792 567 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 567 - -
Gso9g1792 567 CDD mRING-H2-C3H2C2D_ZSWM2 511 554 - -
Gso9g1792 567 MobiDBLite consensus disorder prediction 315 356 - -
Gso9g1792 567 SMART ring_2 512 553 IPR001841 -
Gso9g1792 567 MobiDBLite consensus disorder prediction 56 70 - -
Gso9g1792 567 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Gso9g1792 567 MobiDBLite consensus disorder prediction 317 332 - -
Gso9g1792 567 MobiDBLite consensus disorder prediction 1 122 - -
Gso9g1792 567 MobiDBLite consensus disorder prediction 71 85 - -
Gso9g1792 567 Pfam Ring finger domain 511 554 IPR001841 -
Gso9g1792 567 MobiDBLite consensus disorder prediction 1 22 - -
Gso9g1792 567 MobiDBLite consensus disorder prediction 333 352 - -
Gso9g1792 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 559 IPR013083 -
Gso9g1792 567 SUPERFAMILY RING/U-box 490 560 - -
Gso9g1792 567 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1792 Gso-Chr9 42377277 42382607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1792 226 561 C3H Transcription Factor Family AT5G45290 62.428 3.38e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1792 - - gmx:100786091 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1293 1 49371854 49377298 Gso9g1792 9 42377277 42382607 GST
Gso9g1792 9 42377277 42382607 Gso16g0608 16 7624401 7629864 PCT
Gso16g0608 16 7624401 7629864 Gso9g1792 9 42377277 42382607 PCT