Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1788 ATGAAGTACATTTCCCTCATGTTACTTGCATTTTGGTCTATAAATATCCACCTGTTTTCTCTCTTTACACTAAACACACTATGGTTTAGTTCAAATATGACTGTCATTGCTTCGGGAAATGAGACTGATCATTTGGCATTGTTCAATTTCAAAAAATCCATATCAAATGATCCATATGGAATCTTGTTCTCTTGGAATACTTCCACTCACTTTTGTAACTGGCATGGAATCACATGCAATCTCATGCTTCAAAGAGTTACAGAGTTAAACTTGGACGGATACCAGTTGAAGGGATTCATATCTCCTCATGTAGGCAATCTCTCTTATATGAGAAACTTGAGCCTCTCAAACAACAACTTCCACGGGAAAATCCCACAAGAATTAGGACGGTTGTCACAACTGCAGCATCTCTCCATTGAAAATAACTCATTGGGAGGGGAAATTCCTACAAACTTGACAGGTTGCACTCACCTCAACAGCTTATTCTCATATGGGAACAATTTGATTGGCAAAATACCAATTGAAATTGTCTCACTTCAGAAGCTTCAATATTTGAGCATTTCTCAAAACAAGTTAACCGGAAGAATCCCATCTTTCATAGGAAATCTTTCATCCCTAATTGTTCTAGGGGTGGGTTATAACAATTTAGAGGGAGAAATTCCACAAGAAATATGTCGTCTTAAAAGCCTGAAATGGTTATCAACAGGTATCAACAAACTGACTGGAACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTGTACTGGCAGCTACAGAAAATCAACTTAATGGCACTCTCCCACCAAACATGTTCCACACCCTCCCCAATCTCCGAGTATTTGAAATTGGTGGCAATAAAATCTCAGGTCCAATCCCACCTTCCATCACAAACACATCTATCCTTTCAATACTCGAGATCGGTGGCCATTTCAGGGGACAAGTCCCAAGTCTGGGGAAGCTACAAAATCTTCAAATTCTAAATTTGTCTCCGAACAATCTAGGTAACAATTCAACTAATGATTTGGAGTTTTTAAATTCATTGACAAATTGTAGTAAGTTGCAAGTGTTATCTATAGCCCACAATAATTTTGGAGGTCAGTTGCCAAATTCCTTGGGCAATTTATCCACCCAACTTAGTGAACTAGCTCTTGGGGGTAATCAGATATCAGGAAAAATTCCTACTGAATTAGGAAATTTGATTAACTTAGTTCTCTTGGGTTTGGAACAGAGCCATTTTCAAGGGATTATCCCAAGTGCTTTTGGGAAGTTTCAAAAATTGCAACTTTTAGAATTGAGTGCAAACAAGCTTTCAGGAGATTTACCAGCCTTCCTAGGGAACCTCAGTCAATTGTTTCATTTAGGTTTAGGAGAAAATAAGTTAGAAGGAAATATTCCTTCAAGTATAGGAAATTGCCAAATGTTACAATATCTATATCTTAGGCAAAACAACCTTAGAGGAACCATACCCTTAGAGATTTTTAATTTGTCATCTCTAACACAGGTGTTGGATTTGTCACAAAACTCATTGAGTGGTAGTATCCCAAAAGAAGTAAACAACCTAAAAAACATCAATTTGCTAGATGTGTCTGAAAATCATTTGTCTGGTGAGATTCCGGGAACTATCAGAGAATGCACAATGTTGGAGTACCTCTATTTGCAAGGGAATTCTTTACAAGGAATCATACCATCCTCTTTGGCATCACTCAAAAGTCTTCAACGTTTAGACTTGTCACGAAATCGCTTGTCTGGATCAATTCCTAATGTTCTGCAAAATATGTCTTTCTTAGAATATTTAAACGTGTCTTTTAACATGTTGGATGGTGAGGTACCAACTGAAGGTGTCTTTCAAAATGCAAGTGGGTTAGTGGTTACTGGAAATAGTAAGCTTTGTGGAGGTATTTCAAAACTGCATCTACCACCATGCCCTGTCAAAGGTAAGAAACTTGCAAAACACCATAACCATAAGTTTAGGTTGATAGCAGTGATAGTTAGTGTGGTTGGTTTTCTTCTCATACTGTCAATTATTCTAACTATCTACTGGGTGAGGAAAAGGAGTAAAAGACCATATTTAGATTCACCAACAATTGACCAGCTGGCTAGAGTTTCATACCAAAGCCTACACAATGGAACTAATGGGTTCTCAGCTACAAACTTGATAGGGTCTGGAAATTTTAGCTTTGTCTACAAAGGAACTATTGAGTTAGAAGAAAAAGTTGCTGCCATAAAAGTCCTAAAGCTTCAGAATAAAGGAGCTCACAAGAGTTTCATTGTTGAATGCAATGCACTTAAAAATATTAAACATCGAAATCTGGTTCAGATTTTGACATGTTGCTCCAGCACAGATTACAAAGGTCAAGAATTTAAAGCTATAATTTTCCAGTACATGACAAATGGAAGCTTAGATCAATGGCTTCATCCTAGCACAATAAGTGCAGAGCATCCAAGAACACTGAGCCTCAACCAAAGATTAAATATCATGATTGATGTTGCTTCTGCATTGCATTATCTTCATCATGAATGTGAGCAAATGATCATTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGATATGATTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTATCTCAACCAGTAATGGTACTAATTCTGAGCAAGCAAGTACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCAGAGTATGGAGTGGGTTCTGAGGTGTCTATGAATGGCGACATGTACAGCTTTGGGATTCTTATGTTGGAAATGCTTACTGGAAGAAGACCTACAGATGAAATCTTTGAAGATGGTCAAAATTTGCGTAGCTTTGTGGAAAATTCATTTCCTGGTAATCTTTCACAGATTTTGGACCCATCACTTGTACTAAAACAAGGAGAAGCACCAATAGAAGAAGAAAACAATCAGAATATTAGTCCAGTTGTTCAAAAGTGCTTAGTTACACTCTTTAGTATAGGACTTGCTTGTTCAGTGGAATCACCAAAACAAAGAATGAATATGGTGAATGTAACTAAAGAGCTGAACAAAACCAAAAGAGCCTTTCTTACCGGTGTTGACGCTTGA 3084 0.3735 MKYISLMLLAFWSINIHLFSLFTLNTLWFSSNMTVIASGNETDHLALFNFKKSISNDPYGILFSWNTSTHFCNWHGITCNLMLQRVTELNLDGYQLKGFISPHVGNLSYMRNLSLSNNNFHGKIPQELGRLSQLQHLSIENNSLGGEIPTNLTGCTHLNSLFSYGNNLIGKIPIEIVSLQKLQYLSISQNKLTGRIPSFIGNLSSLIVLGVGYNNLEGEIPQEICRLKSLKWLSTGINKLTGTFPSCLYNMSSLTVLAATENQLNGTLPPNMFHTLPNLRVFEIGGNKISGPIPPSITNTSILSILEIGGHFRGQVPSLGKLQNLQILNLSPNNLGNNSTNDLEFLNSLTNCSKLQVLSIAHNNFGGQLPNSLGNLSTQLSELALGGNQISGKIPTELGNLINLVLLGLEQSHFQGIIPSAFGKFQKLQLLELSANKLSGDLPAFLGNLSQLFHLGLGENKLEGNIPSSIGNCQMLQYLYLRQNNLRGTIPLEIFNLSSLTQVLDLSQNSLSGSIPKEVNNLKNINLLDVSENHLSGEIPGTIRECTMLEYLYLQGNSLQGIIPSSLASLKSLQRLDLSRNRLSGSIPNVLQNMSFLEYLNVSFNMLDGEVPTEGVFQNASGLVVTGNSKLCGGISKLHLPPCPVKGKKLAKHHNHKFRLIAVIVSVVGFLLILSIILTIYWVRKRSKRPYLDSPTIDQLARVSYQSLHNGTNGFSATNLIGSGNFSFVYKGTIELEEKVAAIKVLKLQNKGAHKSFIVECNALKNIKHRNLVQILTCCSSTDYKGQEFKAIIFQYMTNGSLDQWLHPSTISAEHPRTLSLNQRLNIMIDVASALHYLHHECEQMIIHCDLKPSNVLLDDDMIAHVSDFGIARLISTSNGTNSEQASTIGIKGTIGYAPPEYGVGSEVSMNGDMYSFGILMLEMLTGRRPTDEIFEDGQNLRSFVENSFPGNLSQILDPSLVLKQGEAPIEEENNQNISPVVQKCLVTLFSIGLACSVESPKQRMNMVNVTKELNKTKRAFLTGVDA* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1788 1027 Pfam Leucine rich repeat 403 462 IPR001611 GO:0005515
Gso9g1788 1027 Pfam Leucine rich repeat 549 607 IPR001611 GO:0005515
Gso9g1788 1027 SMART LRR_typ_2 594 619 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 203 227 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 546 569 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 401 424 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 251 275 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 570 593 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 449 473 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 131 155 IPR003591 -
Gso9g1788 1027 SMART LRR_typ_2 497 522 IPR003591 -
Gso9g1788 1027 SUPERFAMILY Protein kinase-like (PK-like) 689 1014 IPR011009 -
Gso9g1788 1027 Gene3D Ribonuclease Inhibitor 441 499 IPR032675 -
Gso9g1788 1027 Gene3D Ribonuclease Inhibitor 42 156 IPR032675 -
Gso9g1788 1027 PANTHER LRR RECEPTOR-LIKE KINASE 28 1021 - -
Gso9g1788 1027 Gene3D Ribonuclease Inhibitor 342 440 IPR032675 -
Gso9g1788 1027 ProSiteProfiles Leucine-rich repeat profile. 572 594 IPR001611 GO:0005515
Gso9g1788 1027 ProSiteProfiles Protein kinase domain profile. 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1788 1027 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Gso9g1788 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Gso9g1788 1027 Gene3D Transferase(Phosphotransferase) domain 1 797 1023 - -
Gso9g1788 1027 Gene3D Phosphorylase Kinase; domain 1 696 796 - -
Gso9g1788 1027 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Gso9g1788 1027 SUPERFAMILY L domain-like 40 309 - -
Gso9g1788 1027 SUPERFAMILY L domain-like 378 633 - -
Gso9g1788 1027 Pfam Protein kinase domain 718 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1788 1027 PANTHER OS04G0122200 PROTEIN 28 1021 - -
Gso9g1788 1027 Pfam Leucine Rich Repeat 354 376 IPR001611 GO:0005515
Gso9g1788 1027 Gene3D Ribonuclease Inhibitor 273 341 IPR032675 -
Gso9g1788 1027 Gene3D Ribonuclease Inhibitor 163 272 IPR032675 -
Gso9g1788 1027 Gene3D Ribonuclease Inhibitor 501 641 IPR032675 -
Gso9g1788 1027 SMART serkin_6 715 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1788 Gso-Chr9 42340410 42344294 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1788 40 1022 Receptor kinase-like Gene Family AT3G47570 45.582 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso9g1788 Pkinase 5.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1788 - - gmx:100785561 2015.35