Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1779 ATGGAGAATAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTTGAAATTCAAGATGTCCAAGAACAAATAAGGGCTTTGATCGAGAGGCAAGAGAGTTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAGGAATCTGGAAACGAGGCCAATAATGCGGCTTCGAGCGCTGCGGAAAATTGGAGTGGGGAATTTGAATGGGATTCTGAAGCTGATGATGTTAGGTTGAATGTTTTTGGCATTTCCTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACCGCTTTGGGCATTCCAGCGTATATGTTGACTTCAACTAATAAGGGAGATGAGAAGTTCATATATAAGACTTTGGAGAAGGGAGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCTTCTCAAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCCGATATGGATGTAAATGCTCGGGAAAAAGTCCACATGCGGTGGAGCAATAACAAGCTGCAGGTCATTGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTACTTTAGACCCGGTGATGCTCCACGTCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATTGTACGATATTGTCTGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCATCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGCGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTAGATGTCTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAAAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGGGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGCACGGTTTTTGAAAGAAGAATTTCAGCATACACCTTATGCCACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTCTGCTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTGAACAAATCATCCAATTAGCTTCTCAAAAACCAAACTCGCTGGAACAGTTGGAGAAGCTGATTGGAAAATTGAGGACAGAAAAGTATGGAAATAGAATACTAAAGCAAATTGAAAAATATTATGATTTCGAGCCGACTGATAAACAAGAAATTGATGCTAGGGCCGCAAAGAGGTTGAAGAGCAAGAAAAATCTTGTTATTATTGAATAG 2088 0.4138 MENNEILEELLNIEVEIQDVQEQIRALIERQESLYERKSELSAILEACKESGNEANNAASSAAENWSGEFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKTLEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPRQSSMVFYENSGLQNLYDIVRYCLSKRQCRRSAFFHHFAEPLQECNGMCDICAFSSEVKEVDVSGHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLARFLKEEFQHTPYATNAYIAVGSLAKQILQGKKSVKLEIYTEQRTKDGVRSAKQCLGSSGLELKLDELRKELSSAHGGILPHSVLSTEQIIQLASQKPNSLEQLEKLIGKLRTEKYGNRILKQIEKYYDFEPTDKQEIDARAAKRLKSKKNLVIIE* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1779 695 PANTHER ATP-DEPENDENT DNA HELICASE Q1 7 675 - -
Gso9g1779 695 SMART ultradead3 85 287 IPR014001 -
Gso9g1779 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 421 IPR027417 -
Gso9g1779 695 Gene3D - 279 475 IPR027417 -
Gso9g1779 695 Coils Coil 3 37 - -
Gso9g1779 695 ProSiteProfiles HRDC domain profile. 594 673 IPR002121 GO:0003676
Gso9g1779 695 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Gso9g1779 695 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Gso9g1779 695 Gene3D - 479 579 IPR036388 -
Gso9g1779 695 Pfam HRDC domain 603 662 IPR002121 GO:0003676
Gso9g1779 695 CDD DEXHc_RecQ1 71 278 - -
Gso9g1779 695 SMART helicmild6 325 406 IPR001650 -
Gso9g1779 695 SMART RQC_2 483 580 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso9g1779 695 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 505 IPR004589 GO:0004386|GO:0006310
Gso9g1779 695 CDD SF2_C_RecQ 279 415 - -
Gso9g1779 695 Pfam RecQ zinc-binding 418 474 IPR032284 -
Gso9g1779 695 Pfam RQC domain 480 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso9g1779 695 SUPERFAMILY HRDC-like 603 668 IPR010997 GO:0000166|GO:0044237
Gso9g1779 695 Gene3D - 46 278 IPR027417 -
Gso9g1779 695 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 675 - -
Gso9g1779 695 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Gso9g1779 695 Gene3D HRDC domain 598 668 IPR044876 -
Gso9g1779 695 Coils Coil 511 531 - -
Gso9g1779 695 Pfam Helicase conserved C-terminal domain 302 405 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1779 Gso-Chr9 42243777 42253889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1779 84 419 Eukaryotic Initiation Factors Gene Family AT3G19760 19.373 1.91e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1779 K10899 - gmx:100817635 1331.24