Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1762 ATGGCCGTGTCCCTGACGCAGAGTGCGATAATGGAGATGTGCAGTGCGAATTGCCCCGAGGGCTTGCAACCGGTGCTGCAGGTGATCGAGTTGAAGCTGGTGCAGTCGCAGCAAAACAGCAACGTCGAGAGGTACCGTTTGGTTCTCTCCGACGGTTCACATTACCAGCAAGGGATGCTCGCCACGCAGAAGAACGACTTGGTTCATGCTGGAAAGTTACAGAAAGGTTCCGTTGTTAGACTCACTCAGTTCATCTGCAACGTTGTCCAGAGCCGCAAGATTATTATCATCGTTGACCTAGATGTTGTACTGGACAAATGTGAGCTGATTGGAGAACCTGTCCCTGCACCAAAAGATGCACCTACAGAATCTGCAACTGGTCAATCAGGAGTCACATCTGGGAATCCACAACTTTTGAATAGCAGTTCACACACTGGTGGCATGCCTGCTAGACCAAATGTGGCTTCACCATCTCCAGATCATCCAAAAGTAAATCCTTCTGCCAGTGGTGTTTATTCTAGTAATGCCCCTCCTACTTATCCTAAAGTAGAGCATGGAGTTAGTAGATCAGCACCATTCAGTGGGTCTTCTGGTGGTCAGAACACAGGTTTCCGCAATCCCCAATTTGAGGCGTCAAGGCCCTTGCAAAACTCATATGCTCGTCCACCTCAGCAGCCTATGTACCGTCAGCCATCTCCAATGTACACTAACAGAGCGCCAATGGGAAGAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCATACCAGAGTATGTGGACTATTAAAGCCAGGGTAACATTTAAGGGAGAACTCAGGCACTATACCAATGCTCGAGGTGATGGCAAGGTGTTTTCTTTTGATCTTCTGGATTCTGATGGCGGAGAAATTCGGGCAACTTGCTTCAATGCTGTGGCTGATCAGTTCTACAATGTTATTGAAGCTGGTAAGGTATATCTAATTTCCAGGGGAAGCATAAAGCCAGCTCAGAAGAATTTTAATCACCTTCGCAATGATCAAGAGCTGACCCTTGATGTGGCATCAATTATACAGCCATGCCTTGATGATAATGACTCAATTCCATCACAGACATTTAATTATCGCCCCATTAGTGAAATTGAAAGTTTGGAAAACAACAGCATTGTGGATGTGATTGGTGTGGTGACTTCTATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAGTTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCAGGCCGAAGTGTTGAGTTAACTCTATGGGGAAATTTTTGCATTGTAGAAGGACAAAGGTTGCAAACTATTTGTGATGCTGGGGAATTTCCAGTTTTGGCTACAAAAGCTGTCAGAGTAAATGATTTCAATGGGAAGTCTGTCGGGACTATAGCCACTAGTCAGCTATATGTGGAGCCTGATTTTCCTGAGGCTTGTACACTGAAAAGATGGTTTGAAAATGAAGGGAAGAGTGTCCCAACTCTCTCTATTTCCAGAGAAATATCTAATCTGGGTAAGACTGATGTGCGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTTTGCAGCTGTTTCACACATTAAGGTTGATAACTTCTGTTACCCAGGGTGCCCTCTCAAGATAGGGGATAGACAATGTAACAAAAAGGTGACTAATAACGCAGATGGGACATGGCATTGTGAAAGATGTAATCAGTCTATTGACACATGTGACTTTAGGTACTTACTGTCAATGCAGATACAGGATCACACTGGCATAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATAATGGGTATACCTGCAAAAGATTTGTATTATATGAAGTATGAAGAGCAAGATGATGATAAGTTTTCTGAAATCTTCCACAAGGTTCTCTTCACCGAGTACATGTTCAAGTTAAGAATAAAAGAGGAATTCTACAGTGATGAACAACGTATTAAGTCAACGATAGTAAAAGCAGAAAAGGTAAACTTTGCTTCTAAATCTAGAGTTAATTTGGAGTTGATTTTTAACGAACTCAGGGCTGAGAAATCGAAAGGTATCACCATTCCCAACTCTGTAACCAATAATACTAGACTGGGGAGCGTTGAAACTGGACAAGTTACACCACCAGCTTATTATAAGAGCAATGCTAATACCAGTAGAGATTTTGGGATGCCGGCAAATCAAGTGGGTCAACAGCATGGAAACCAATATAGCAATATTTCTTCTGCAGGTGCTGCTCCTGGTTCATATACATCATGCACCAACTGTGGAGTCTCTGGTCATAGCTCTGCACTTTGCCCAAATATTAGAAATGTACCTGGACATTCTGCAGGAGGGGGCTTTGCCAACAGGGCATCTGCGGGATTAGGTGGTGGTGGTGGAGCTTCTGTCGAATGCTATAAATGTCATCAAAGTGGTCATTATGCAAGAGATTGTCCTGGTTTCAGTGCAGCACCTCCATCATCATATGGGAGCAATTCAGGTGGTGGTGGTTCTGGCGAATGCTTTAAATGCCATCAAACTGGCCACTGGGCAAGAGACTGTCCTGGTCTCAGTGCAGCACCTTCATCATATGGAAGCGCTAATGCAATGCAGGGAAGATATGGGGTTGCTCAAAAGCAACAATTTGGAGGATATTGA 2685 0.4387 MAVSLTQSAIMEMCSANCPEGLQPVLQVIELKLVQSQQNSNVERYRLVLSDGSHYQQGMLATQKNDLVHAGKLQKGSVVRLTQFICNVVQSRKIIIIVDLDVVLDKCELIGEPVPAPKDAPTESATGQSGVTSGNPQLLNSSSHTGGMPARPNVASPSPDHPKVNPSASGVYSSNAPPTYPKVEHGVSRSAPFSGSSGGQNTGFRNPQFEASRPLQNSYARPPQQPMYRQPSPMYTNRAPMGRNEAAPRIIPIAALNPYQSMWTIKARVTFKGELRHYTNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSIKPAQKNFNHLRNDQELTLDVASIIQPCLDDNDSIPSQTFNYRPISEIESLENNSIVDVIGVVTSISPTASIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLATKAVRVNDFNGKSVGTIATSQLYVEPDFPEACTLKRWFENEGKSVPTLSISREISNLGKTDVRKTISQIKDEKLGTSEKPDWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQSIDTCDFRYLLSMQIQDHTGITWVTAFQESGEEIMGIPAKDLYYMKYEEQDDDKFSEIFHKVLFTEYMFKLRIKEEFYSDEQRIKSTIVKAEKVNFASKSRVNLELIFNELRAEKSKGITIPNSVTNNTRLGSVETGQVTPPAYYKSNANTSRDFGMPANQVGQQHGNQYSNISSAGAAPGSYTSCTNCGVSGHSSALCPNIRNVPGHSAGGGFANRASAGLGGGGGASVECYKCHQSGHYARDCPGFSAAPPSSYGSNSGGGGSGECFKCHQTGHWARDCPGLSAAPSSYGSANAMQGRYGVAQKQQFGGY* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1762 894 CDD RPA1_DBD_A 252 355 - -
Gso9g1762 894 SUPERFAMILY Nucleic acid-binding proteins 515 689 IPR012340 -
Gso9g1762 894 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 214 684 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso9g1762 894 Gene3D - 4 116 IPR012340 -
Gso9g1762 894 PANTHER REPLICATION FACTOR A 1, RFA1 3 729 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso9g1762 894 ProSiteProfiles Zinc finger CCHC-type profile. 850 864 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 CDD RPA1N 8 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1762 894 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1762 894 Pfam Zinc knuckle 813 828 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 Pfam Zinc knuckle 849 864 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Gso9g1762 894 Gene3D - 845 872 - -
Gso9g1762 894 SUPERFAMILY Nucleic acid-binding proteins 250 363 IPR012340 -
Gso9g1762 894 Pfam Replication factor-A C terminal domain 534 683 IPR013955 -
Gso9g1762 894 Pfam Replication protein A OB domain 373 476 IPR031657 -
Gso9g1762 894 Pfam OB-fold nucleic acid binding domain 263 350 IPR004365 GO:0003676
Gso9g1762 894 MobiDBLite consensus disorder prediction 113 237 - -
Gso9g1762 894 SUPERFAMILY Nucleic acid-binding proteins 368 497 IPR012340 -
Gso9g1762 894 CDD RPA1_DBD_B 384 491 - -
Gso9g1762 894 PANTHER REPLICATION PROTEIN A SUBUNIT 3 729 - -
Gso9g1762 894 MobiDBLite consensus disorder prediction 122 149 - -
Gso9g1762 894 CDD RPA1_DBD_C 518 689 IPR013955 -
Gso9g1762 894 SUPERFAMILY Retrovirus zinc finger-like domains 837 867 IPR036875 GO:0003676|GO:0008270
Gso9g1762 894 MobiDBLite consensus disorder prediction 160 176 - -
Gso9g1762 894 ProSiteProfiles Zinc finger CCHC-type profile. 814 828 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 Gene3D - 502 690 IPR012340 -
Gso9g1762 894 Gene3D - 249 359 IPR012340 -
Gso9g1762 894 SUPERFAMILY Retrovirus zinc finger-like domains 805 831 IPR036875 GO:0003676|GO:0008270
Gso9g1762 894 MobiDBLite consensus disorder prediction 190 225 - -
Gso9g1762 894 SMART c2hcfinal6 813 829 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 SMART c2hcfinal6 767 783 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 SMART c2hcfinal6 849 865 IPR001878 GO:0003676|GO:0008270
Gso9g1762 894 Gene3D - 763 840 - -
Gso9g1762 894 Gene3D - 362 500 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1762 Gso-Chr9 42089189 42092936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1762 1 796 Core DNA Replication Machinery Family AT5G45400 50.058 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1762 K07466 - gmx:100778597 1776.53