Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1761 ATGGCCGTGTCTCTGACACAGGGGGCGATAACGGAGATTTGCAGAGGCAATTGCTCCGAAAACTTGCAACCGGTGCTGCAGGTGATCGAGTTGAAGCAGGTGCAGTCGCAGCAAAACAGCACCGTCGAGAGGTACTGCGTGGTTCTTTCCGACGGGTCCTTTTACCAGCAAGGGATGCTCGCCACGCAGAAGAATGACTTGGTTCATTCGGGAAAGTTGCAGAAAGGTTCCGTTCTTAGACTCACTCAGTTCCTCTGCAATGTTGTCCAGAACCACAAGATTATTATCATCATTGACCTAGATGTTATACTGGACTATTGTGAGCTGATTGGACAACCTGTCTCAACACCAAAACACACACCTAAAGAACCAGGAGTCAACTTTGGGAATTCACAATCTTTAAATAGCAGTTCACATGCAGGTGGCATGAATGCTAGACCAAATGTATCTGGGTCATCTATCTATTATCCAAAAGCGAATCCTCCTGCTCGTAATGACCCTCCTGCTTATCCTAAAGCAAAGACTCTGACGCAGGGGGCGATAATGGAGATATGCAGTGGCAATGACCCCAAGAATTTGCAGCCGGTGCTGCAGGTTATCGAGTTTAAGCTGGTCCAGTCGCAGCAAAACAGCACCATTGAAAGGTACCGTGTGGTTCTCTCTGACGGTTCCTTTTACCAGCAAGGGATGCTCGCCACACAGAAGAATGAGTTGATCTATTCTGGAAGGTTGCAGCAAGGCGCCATTATTAGACTCACACAGTTCATCTGCAATGTTGTTCAAAACCGCAAGATTATTATCATAGTTGACCTAGATGTTATATGTGAAAAATGTGAGCTGATTGGAGAACCTGTCGCAGCTCCAAAAGGTGCACCTGCAGAATCTGCCACTGGTCAATCTGGATTCACCTTTGGAAATTTGCAATATTTGGATAGGAGTTCACATTCAGGTGGTATGACTACTATACAAAATTTGGCTGGTCAATCTCTGGACTTGAAGCCAGTGCTGCAAGTTCTGGAGTTGGAGTTGGTGAACTCCCAACAACATAGCGCCTCCGTGAATTTCCATTTGGTTCTCTCCGATGGTTACCATTTCCAGCAAGCGATGCTCACGACGCAGAAGAATCAATTGGTTCGTTCTGGAAAGTTGCAAAAAGGTTCCATTGTTAGACTCACTCAGTTCGTCTGCAACATTGTCCAGAGTTGCAAGATTATTATGGTTCTTGATCTAGATGTTGTGCTGGAGAAATGTGAGCTGTTAGGACAACCTGTTGCAGCACCTGCAGAATTTGCCACTGGTCAACCTTCTGGATTCACCTTTGGGAATTCACAATCTTTGAATAGCTGTTCACACGCAGGTGGTGTCAGTGGGCTGGCAAATGATTTTAGTGCCATGAACCTTGCCACCGGGCAAGTTACGCCTCCAGCTTATAATCCAATAAATAGCAGTAGTGATTTTGATTTTGGGATGCCAACAAACCAAGTGGGTCAACGGTATGAAAGCCAATATAACAATTTTGTTTCAGCAGGTGCTCCTGGTTCATATATGTCATGCACCAATTGTGGAGGCTCTGGCCATAGCTCTCTTCTTTGCCCAAATATTAGAAATCTACCTTTGGGATCAGGTGGTGGTGCTTCTGTCGAATGCTGTAAATGCCATCAATCTGATCACTGGGGGGAGAGATTGCCCTGA 1692 0.4586 MAVSLTQGAITEICRGNCSENLQPVLQVIELKQVQSQQNSTVERYCVVLSDGSFYQQGMLATQKNDLVHSGKLQKGSVLRLTQFLCNVVQNHKIIIIIDLDVILDYCELIGQPVSTPKHTPKEPGVNFGNSQSLNSSSHAGGMNARPNVSGSSIYYPKANPPARNDPPAYPKAKTLTQGAIMEICSGNDPKNLQPVLQVIEFKLVQSQQNSTIERYRVVLSDGSFYQQGMLATQKNELIYSGRLQQGAIIRLTQFICNVVQNRKIIIIVDLDVICEKCELIGEPVAAPKGAPAESATGQSGFTFGNLQYLDRSSHSGGMTTIQNLAGQSLDLKPVLQVLELELVNSQQHSASVNFHLVLSDGYHFQQAMLTTQKNQLVRSGKLQKGSIVRLTQFVCNIVQSCKIIMVLDLDVVLEKCELLGQPVAAPAEFATGQPSGFTFGNSQSLNSCSHAGGVSGLANDFSAMNLATGQVTPPAYNPINSSSDFDFGMPTNQVGQRYESQYNNFVSAGAPGSYMSCTNCGGSGHSSLLCPNIRNLPLGSGGGASVECCKCHQSDHWGERLP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1761 563 PANTHER REPLICATION PROTEIN A SUBUNIT 3 152 - -
Gso9g1761 563 PANTHER REPLICATION PROTEIN A SUBUNIT 175 285 - -
Gso9g1761 563 PANTHER REPLICATION PROTEIN A SUBUNIT 319 484 - -
Gso9g1761 563 Pfam Replication factor-A protein 1, N-terminal domain 317 414 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1761 563 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1761 563 Pfam Replication factor-A protein 1, N-terminal domain 176 275 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1761 563 PANTHER REPLICATION FACTOR A 1, RFA1 319 484 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso9g1761 563 PANTHER REPLICATION FACTOR A 1, RFA1 175 285 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso9g1761 563 PANTHER REPLICATION FACTOR A 1, RFA1 3 152 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso9g1761 563 Gene3D - 4 116 IPR012340 -
Gso9g1761 563 Gene3D - 175 287 IPR012340 -
Gso9g1761 563 Gene3D - 316 426 IPR012340 -
Gso9g1761 563 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Gso9g1761 563 MobiDBLite consensus disorder prediction 118 143 - -
Gso9g1761 563 CDD RPA1N 8 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1761 563 CDD RPA1N 179 264 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1761 563 SUPERFAMILY Nucleic acid-binding proteins 175 282 IPR012340 -
Gso9g1761 563 MobiDBLite consensus disorder prediction 151 170 - -
Gso9g1761 563 MobiDBLite consensus disorder prediction 125 143 - -
Gso9g1761 563 CDD RPA1N 317 413 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso9g1761 563 Gene3D - 511 563 - -
Gso9g1761 563 SUPERFAMILY Nucleic acid-binding proteins 328 419 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1761 Gso-Chr9 42082839 42086233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1761 331 444 Core DNA Replication Machinery Family AT4G19130 39.130 1.33e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1761 K07466 - gmx:100812465 1125.92