Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1728 ATGGGTTACGAAGACAATCCGTATCGCGACGAGGACGGAGAGCCCTTGATGGACTACGACGACGTTCAATCCGATCGCGAGCCATCTCCCGAGCCTCGCCACCAGCTCGACGATTTCGAGGAGGATGTCGACGAGTGGCGCGGCCGCGATCGGTCTCAGACGCCGGTCTACGACACCGATCCGTCGCGGTCGAAGCCGCGGAAAAGGCTGATCAAGAAGAGCGATGCCGGGAAGCAGGCGGTGGAGCCGGAGCTTGAGGACGAGGACGTGGAGGGGTATGTTCCGGAGGGGGTGTTCGACGAGGGGGACGCTGGGAGGAAGAGGAAGAAGGGTAAGGAGGGTGGGAGTGGGAAGAAGGAGAAGAGGATGAAGGGAGAGAAGAGTTTTGGGAGTGGCGGTGCGAAGAGTGGGTCCAAATTTGGGAGTGGAAAGAAAGGGTTTGGTGGGAAGGCAGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGGGGAGATTCTGAGGATGATCAAGAGGGTCTCAGGAATGTGGATGATGACAACTTTATTGATGACACTGGAGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCTCCCGGTGATGCTCCCCAGGCAGAGGAGGGTGAAGAGGACGAAGAAATTAAGGATCTTTTCAAGATAGGTAAGAAAAAGAAGAAGAATGAGAGAAGTCCTGCAGAAATAGCTTATTTAGTTGAGACTGTCATGGCTGAGCTTGAGGTTACAGCTGAGGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCGTTAATAAACTCAAGAAGTTGAATCTTCTTACAGAAGTCCTCTCAAAGAAACAGCTTCAACTGGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATAAATATACGCACAGAAGTTTTGAAGATATTGAATGATTTTCCTATAGATCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGGAAGGTCATTATGTTTCTATCGAAGTCTGATGAAGAAATCAATGTGAATAGGAAACTAGCCAAGGAGCTGGTTGATAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGGTTTGAAGACATGAGAAATGTGGAGGATGATAGGGTTCCTTATAGGAGACCATCAGTTAAAAAGCCGGCAAATAAAGCTGCAGGAATGGAATCTAGAGACAGTGATCTTGATTTAGAACTTTCACAGCCTAGGTCTGGACAGTCCTCTTCTAGGCAGCATGCATCAAGGCCGGAAGCAACACCTTTGGATTTTGTGGTCCGGCCCCAGTCTAAAATTGATCCAGAAGAAATTAGAGCACGAGCAAAACAAGCTGCACAAGATCAGCAGCGTATGAAGATGAATAAGAAATTGCAGCAATTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCTACAAAATTGAGCGTGGAAGGTCGTGGTATGATCAAATATTTATAA 1527 0.4754 MGYEDNPYRDEDGEPLMDYDDVQSDREPSPEPRHQLDDFEEDVDEWRGRDRSQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEGVFDEGDAGRKRKKGKEGGSGKKEKRMKGEKSFGSGGAKSGSKFGSGKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDQEGLRNVDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDEEIKDLFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAVNKLKKLNLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEVLKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPYRRPSVKKPANKAAGMESRDSDLDLELSQPRSGQSSSRQHASRPEATPLDFVVRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1728 508 Pfam TFIIS helical bundle-like domain 323 378 IPR017923 -
Gso9g1728 508 MobiDBLite consensus disorder prediction 424 440 - -
Gso9g1728 508 MobiDBLite consensus disorder prediction 100 128 - -
Gso9g1728 508 MobiDBLite consensus disorder prediction 148 186 - -
Gso9g1728 508 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 - -
Gso9g1728 508 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 293 381 IPR035441 -
Gso9g1728 508 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 236 384 IPR035441 -
Gso9g1728 508 MobiDBLite consensus disorder prediction 1 219 - -
Gso9g1728 508 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 IPR044204 GO:0009742|GO:0032784
Gso9g1728 508 MobiDBLite consensus disorder prediction 1 65 - -
Gso9g1728 508 MobiDBLite consensus disorder prediction 396 458 - -
Gso9g1728 508 ProSiteProfiles TFIIS N-terminal domain profile. 298 381 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1728 Gso-Chr9 41746047 41750495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso9g1728 Med26 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1728 K17498 - gmx:100801805 902.123