Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1716 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTAAACCCAGACACCCTCTTCTCTTCCTCGATCCAGAACTCTAGCTTCAACTTCATCCCCACCATGCCCTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATCTTGCGAGGGAAGGAAGAGATTGAGAGTGGATCAGGGAGTGAACAATTAGTTGAAGACAAGTCAGGGAATGAACAAGAGAGTCATGAACAACCCACAAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCGGATGATAAGCAGAGACTGAAACTGAGCCATGAATTGGGTCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGACCGTGCAGATAATGTGATACTTAGAGCTGAGAATGAGTCTCTTAAGAGTGAGAATTATCGGTTACAAGCTGCACTGCGTAACGTAATTTGTCCCAACTGTGGTGGCCCATGCATAATGGGTGCTGATATGGGCTTGGATGAACACCAAGTTCGCATTGAAAATGCCCGTTTAAGAGAAGAGTTAGAACGCGTGTGTTGTCTCACAACAAGATACACTGGGCGTCCAATACAAACAATGGCAACAGGTCCTACTCTAATGGCCCCTTCATTGGATTTGGACATGAGCATATACCCAAGGCACTTTGCGGATACCATTGCTCCTTGCACTGAAATGATTCCTGTGCCAATGTTGCCTCCCGAAGCTTCACCTTTTTCTGAGGGTGGTATCCTAATGGAAGAAGAGAAGTCTCTGACCTTGGAGCTTGCCGCTTCCTCCATGGCTGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATTCGAAGCACTGAGAGTGAAAGGGAAGTGCTCAATTTTGAAGAGCATGCAAGGATGTTTGCTTGGCCTCAGAATCTCAAGCATCGAAGTGAGCTAAGGACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAATAGTGTAACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCTTGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTATCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAGCCTGTGCATCAGATATTCTGCAACTATGTGTACAGTGGAATGGCATTTGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTCGCAAGCCTCATGGCCAGAAACATATCAGATCTTGGAGCGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAGCTAGCTCAAAGAATGATAAAAACGTTTAGCCTTAACATGAGTACCTCTGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGACAACCTAATGGCGTGATTCTAAGTGCAGTTTCAACTACTTGGTTGCCCTATTCTCACACCAAGGTCTTTGATCTCCTCAGGGATGAACGCCGCAGATCTCAGATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATGTAGCGAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAATTGCACCGACCAATCTGGAAGCATAGTAGTGTACACAACCATCGACGTGGATTCGATCCAGCTAGCCATGAGTGGTGAGGACCCTTCTTGCATTGCACTTCTTCCCCAAGGCTTCAAGATAGTGCCAATGTCATCACCACCCAACAACGTTGACACACCCATCATCGATGCCGCAACAAACTCATCATCAGAGCCTCCTCCATCTCTCAACAACAACAACTCAGGTGGTTGCCTCCTGACAATGGGGCTGCAGGTTCTCGCGAGCACGATCCCTTCTGCAAAGCTCAACCTCTCGAGCGTCACCGCTATCAACAATCACCTTTGCAACACCTTGCACCAGATTGAAGCTGCTCTTTCTTCTTCTAGCTCCCATGAGAATGGCAATGGCTCTTTCCTTTGCACTGAACCCACCAAGCAGTGA 2403 0.464 MYGDCQVMSSMGGNVVVNPDTLFSSSIQNSSFNFIPTMPFQPFPSMKEEDGILRGKEEIESGSGSEQLVEDKSGNEQESHEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENESLKSENYRLQAALRNVICPNCGGPCIMGADMGLDEHQVRIENARLREELERVCCLTTRYTGRPIQTMATGPTLMAPSLDLDMSIYPRHFADTIAPCTEMIPVPMLPPEASPFSEGGILMEEEKSLTLELAASSMAELVKMCQTNEPLWIRSTESEREVLNFEEHARMFAWPQNLKHRSELRTEASRDTSVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGLASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGAIPSPEARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERRRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQENCTDQSGSIVVYTTIDVDSIQLAMSGEDPSCIALLPQGFKIVPMSSPPNNVDTPIIDAATNSSSEPPPSLNNNNSGGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSSSSHENGNGSFLCTEPTKQ* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1716 800 MobiDBLite consensus disorder prediction 781 800 - -
Gso9g1716 800 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Gso9g1716 800 CDD homeodomain 86 144 IPR001356 GO:0003677
Gso9g1716 800 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Gso9g1716 800 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Gso9g1716 800 CDD START_ArGLABRA2_like 280 509 - -
Gso9g1716 800 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Gso9g1716 800 Gene3D - 70 154 - -
Gso9g1716 800 MobiDBLite consensus disorder prediction 58 93 - -
Gso9g1716 800 PANTHER - 61 787 - -
Gso9g1716 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 61 787 IPR042160 -
Gso9g1716 800 MobiDBLite consensus disorder prediction 58 84 - -
Gso9g1716 800 SUPERFAMILY Homeodomain-like 74 144 IPR009057 -
Gso9g1716 800 SUPERFAMILY Bet v1-like 277 512 - -
Gso9g1716 800 Gene3D - 287 494 IPR023393 -
Gso9g1716 800 Pfam START domain 286 510 IPR002913 GO:0008289
Gso9g1716 800 SMART HOX_1 84 147 IPR001356 GO:0003677
Gso9g1716 800 SMART START_1 285 510 IPR002913 GO:0008289
Gso9g1716 800 SUPERFAMILY Bet v1-like 537 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1716 Gso-Chr9 41595838 41602722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1716 26 782 Homeobox Transcription Factor Family AT5G46880 57.407 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g1716 START 1.1e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1716 - - gmx:100812829 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0129 1 1443731 1450497 Gso9g1716 9 41595838 41602722 GST