Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1704 ATGCCCGAACCGGCTCCTTCTTCTTCCAATTCTCACTCCGTGGAGGACAATGTAAACGTTGAAGCCACTGGCACGCCGCAAAATCGCCATAACAAGGACGGTGCCGGTGCCTCCGAGATCAACACCGTTGACGGCTCCGATCGCGTGGCTAGTTCAAGCAAGGCCGAGGAAGGAGACGGTGATGATAATGATGATTATATTCAAGCCAGGGTTGATAAGTTGCTCTGTAAAATCGAGGAACCTGAATTGTCCGAGGAACAGATCAGAATCAATGATCAATCGCAGCAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGGTGGAAAGGCCTGCGTTGTTTTCAGATACATATAAATGTTGATGTTTTGGGTGAAATTGCCATTACTGCTAACCTAAACTCTATCAATCAACTTGAGACTCTAAGCAGCAATTCAGATGAGTTCTTGTACACTTTCAAAGTTCAATATCTACCACCAATTGTTTTGACGTGTTTATTACCTAAGTCGTACCCAAGCGACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGTGAAGATTCTGAATCTGTGCTACAAGTTGGATTCAATATGGGAAGAACAACAGGGTCAGGAAGTGATTTACCCTTGGGTAGAATGGTTACATAGTTCTTCTCTTTCTCATCTGGGATTTGATGAGGAAATCATACTTGGGCCTTATGGCATGAATTATGTCCAGGATGAGCGTGTTATTTCAGGAGCTGAATGCATTGATGTTGATATTCCTTTTTTACGAAGTTACAACGATGAGAGACACAATGAGAACTTCCTCAAAGAATTGCATGATTGTAACATTTGCTTTAGTGAATATGCAGGCTCTCAGTTCATCCGGTTACCATGTGAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTAAATGTCCTGAAGCAAAATGTGCAATTATGATTCCTCCTGGCCTTTTAAAACAATTGCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGGTGTGAAACACCCTGCATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTACTTTAGCTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTTGTCTCAATTAAAGGAAGATCAAAAGCGAAGGGAACGTGAAAAGATCAATGAAATGCTCAATATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGTGGTAACTGTGAACAATACTTCTGTTACCGCTGCAACAAAGCAATTGATGCATCAGATCCATATGGACATTTCAGGGATGGTTCATGTGAATTGTTCCCACGAGAAATGGTTGATTCCTGGGAAGAGCGCATTAATCATCGCCAGGCGGTAGGACAACTACAGGCTGAGCTCTTTCCTCAACATGGCTTGGCGTGTCCTAGTTGTCGTCAATATAATCCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAACGCCATTACTGCTACTTATGCAAAGCGATTGTCAGGCGTGGCACTAAGCATTATGGACCAAAGGGCTGCAAACAGCACTCTGAGGGATAG 1785 0.4246 MPEPAPSSSNSHSVEDNVNVEATGTPQNRHNKDGAGASEINTVDGSDRVASSSKAEEGDGDDNDDYIQARVDKLLCKIEEPELSEEQIRINDQSQQDEILVVESIYGENVFSLERWKGLRCFQIHINVDVLGEIAITANLNSINQLETLSSNSDEFLYTFKVQYLPPIVLTCLLPKSYPSDQPPIFTLSVKWLEPVKILNLCYKLDSIWEEQQGQEVIYPWVEWLHSSSLSHLGFDEEIILGPYGMNYVQDERVISGAECIDVDIPFLRSYNDERHNENFLKELHDCNICFSEYAGSQFIRLPCEHFFCLKCLQTFAQIHVKEGTVSNLKCPEAKCAIMIPPGLLKQLLDDTDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNLSQLKEDQKRREREKINEMLNMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPREMVDSWEERINHRQAVGQLQAELFPQHGLACPSCRQYNPKIGNNNHLFCWACQRHYCYLCKAIVRRGTKHYGPKGCKQHSEG* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1704 594 SUPERFAMILY RING/U-box 282 366 - -
Gso9g1704 594 MobiDBLite consensus disorder prediction 1 35 - -
Gso9g1704 594 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 37 574 - -
Gso9g1704 594 SUPERFAMILY RING/U-box 355 417 - -
Gso9g1704 594 SUPERFAMILY RING/U-box 535 591 - -
Gso9g1704 594 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 574 IPR031127 GO:0004842|GO:0016567
Gso9g1704 594 SMART ring_2 287 334 IPR001841 -
Gso9g1704 594 SMART ring_2 375 463 IPR001841 -
Gso9g1704 594 SMART ring_2 543 572 IPR001841 -
Gso9g1704 594 SUPERFAMILY UBC-like 92 227 IPR016135 -
Gso9g1704 594 MobiDBLite consensus disorder prediction 1 65 - -
Gso9g1704 594 ProSiteProfiles Zinc finger RING-type profile. 287 335 IPR001841 -
Gso9g1704 594 Pfam zinc-RING finger domain 287 332 IPR001841 -
Gso9g1704 594 Pfam RWD domain 93 227 IPR006575 GO:0005515
Gso9g1704 594 SMART ibrneu5 355 413 IPR002867 -
Gso9g1704 594 SMART ibrneu5 442 507 IPR002867 -
Gso9g1704 594 Gene3D Ubiquitin Conjugating Enzyme 84 233 IPR016135 -
Gso9g1704 594 Gene3D - 428 536 - -
Gso9g1704 594 SUPERFAMILY RING/U-box 446 502 - -
Gso9g1704 594 Pfam IBR domain, a half RING-finger domain 355 413 IPR002867 -
Gso9g1704 594 Pfam IBR domain, a half RING-finger domain 451 493 IPR002867 -
Gso9g1704 594 ProSiteProfiles TRIAD supradomain profile. 283 513 IPR044066 -
Gso9g1704 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 370 IPR013083 -
Gso9g1704 594 ProSiteProfiles RWD domain profile. 97 232 IPR006575 GO:0005515
Gso9g1704 594 ProSitePatterns Zinc finger RING-type signature. 304 313 IPR017907 -
Gso9g1704 594 SMART RWD2001b 97 232 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1704 Gso-Chr9 41459615 41469307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1704 287 502 ARIADNE family AT2G31780 23.171 9.74e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1704 K11971 - gmx:100500662 1255.35