Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1701 ATGGGAAGGTCACCGTGTTGTGAGGAGAGTAGTAGTGTAAAGAAAGGGCCATGGACGCCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACATGGCCATGGCAGCTGGAGAACACTTCCAAAGCGTGCTGGTCTCAATAGGTGTGGCAAAAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCAAGTTCAGTGAAGATGATGAGAGGATTATCATCAACTTTCATTCAGTTCTCGGAAACAAGTGGTCGAAGATTGCAGCACATCTGCCAGGAAGAACTGATAATGAGATAAAGAATTATTGGAACACTCACATAAGGAAAAAGCTTCTGAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCATGTCAAACTTGAGCAGTGCCATTAGCACTGCTTGGGGCAATAAGCCTCTAGGTTTACAGCCAGATATCACTCAGCTAGCCAAAATACAACTTGTGCAAAATCTTTTGCAACTTATCAACAACAATTCATTTGTTAACATTGGAAATAATAACCCTTACCTCTTATCCAATCCCAACCTCAACCCTTTATTTCTGAATGGCATAAACCCCCTCCAAACTAATAAGGAGCCTCATGTGGTGTTGAGTGGTAGTGAAGAATATGCTAACCCTGGTTTATACTCTCAAGCACAAAGCCAGTGCTCTCAGCATGATGTTTCAAAATCATTGGCAGATTTAGATGGTGGATCTATTCCACAAGATTACAACAAAATTAACAGCACTACTACTTCACGTGAAAATCTAGCAGAAAATCCACCTCTTCCTGCATTAGTTGCATTCCCTCCAAAGATGGGAACCTTCAACCAAATGGACAGTGGCTGTAATATAGCTGCTCAAACGTCAACAGAGTCACCTTCCAACACAATCTTTGATGATTGGGAGAAGTTGCTTGACGATGAAACAAGCGGTTCCTATTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCGTCACCAATTTTGTGGTAG 1059 0.4212 MGRSPCCEESSSVKKGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFSEDDERIIINFHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSAISTAWGNKPLGLQPDITQLAKIQLVQNLLQLINNNSFVNIGNNNPYLLSNPNLNPLFLNGINPLQTNKEPHVVLSGSEEYANPGLYSQAQSQCSQHDVSKSLADLDGGSIPQDYNKINSTTTSRENLAENPPLPALVAFPPKMGTFNQMDSGCNIAAQTSTESPSNTIFDDWEKLLDDETSGSYWKEILDLTSTSASPILW* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1701 352 Gene3D - 14 67 - -
Gso9g1701 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 - -
Gso9g1701 352 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso9g1701 352 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso9g1701 352 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gso9g1701 352 SMART sant 14 64 IPR001005 -
Gso9g1701 352 SMART sant 67 115 IPR001005 -
Gso9g1701 352 PANTHER MYB TRANSCRIPTION FACTOR 1 343 - -
Gso9g1701 352 CDD SANT 70 113 IPR001005 -
Gso9g1701 352 Gene3D - 70 136 - -
Gso9g1701 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Gso9g1701 352 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gso9g1701 352 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso9g1701 352 CDD SANT 17 62 IPR001005 -
Gso9g1701 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1701 Gso-Chr9 41417542 41420025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1701 1 341 MYB Transcription Factor Family AT5G16770 45.902 1.22e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g1701 Myb_DNA-binding 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1701 K09422 - gmx:100810159 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0145 1 1634109 1636689 Gso9g1701 9 41417542 41420025 GST
Gso9g1701 9 41417542 41420025 Gso16g0745 16 14472798 14475517 PCT
Gso16g0745 16 14472798 14475517 Gso9g1701 9 41417542 41420025 PCT