Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1699 ATGGGTAAGAGGAAACAAAAGGACTTACAACAATCCTCCCAAACCGACACCGTTTCAACACCTTCCAGCATTTTCAGCAAGCTCTTCGCCATCGCGCCGGAACGGACCACCGCAACCACCGCCGCCTCTCTATTTTCCGATGACAACCCCTTTCGAAGAAAACCTACTCCACTTTCCGACTCAACAAACCGCACTCAGAACCCTAACGACGGCGACCACCCCGTGAACACCGATTCCGGCGAGGAAAAGAAGCGGAAGAGGAACAAGGAAAAAACGGACAAAACCCCAGCCCCAGCCATCGATACCGTTGTTTCCGTAATCGAAGCTTCGGATAAATCGGAGAAGAAGAGGAAACGCGATTCCGACGAAGGAAAAGACCTTATTGTGGGTGCAGAAGCGAGTGGGAAGAGGAAAAGGAAAAGGGGCGAAGTTGAGAAAGATTGGGAGGAGAAGAAGTATGGGATTGTGGAGGAAGGGCTTGAGAATAAAACCGTTGGGATCAAGAGGAAGACGTTGGATGATCCAGCTGATATGATGGTTTCAAAGGAGGGTTTTGATGATGAGGATAAACTCTTAAGGACTGTTTTCGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTCTTTTGAAGGAGTTTAAGAAGTTTGGTGAGGTTGAGTCTGTGAGGATTCGTTCTGTCCCAATACAAGATACCAAGAAACCTAGAAAGGGAGCTATCCTTGCGAAGAAAATAAACGATGCTGCTGATAGTGTTCATGCATACATTGTTTTCAAAACAGAGCAATCGGCACAGGCTTCTTTGTCACACAACATGTCCCTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGAGTACTCCACTTTATGATGATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAATTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACCAAGGAAGCTGCTAAATTTGTTGTTAAGAAACGGAACTTGAAGCTTCGTGACCGAGAGTTGAGACTCTCTCATGCCAAAGTTGATGCTACCCCGTCTAAAAGGCCAAACCCATCATCAGCTCATGCTCCTAGTACCCCTGCAAAAAGGCCATACCCATTAGCACATGCTCCTAGTACCCCTGCAAAGGAGTTTTCTGTGGCTTCACGGTCTCCATCAAGCAGTAATAACATGTCAAAGTCAAACAGAAAAACCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCTGATGTGCACAAGAAAATCCAAGGAGGAGAAAAACCAAAAGAACGCATGACAAAAAGACCTTCAGTAGCTGCCAGAAAGGCTAAAGCAAAATTGGGCAAGGAGAGTGATCTACCAAAACAAGCAGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCCTACGTAATAGGAAAGTAAAAAAGAACAGGTAG 1560 0.4513 MGKRKQKDLQQSSQTDTVSTPSSIFSKLFAIAPERTTATTAASLFSDDNPFRRKPTPLSDSTNRTQNPNDGDHPVNTDSGEEKKRKRNKEKTDKTPAPAIDTVVSVIEASDKSEKKRKRDSDEGKDLIVGAEASGKRKRKRGEVEKDWEEKKYGIVEEGLENKTVGIKRKTLDDPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESTPLYDDKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSHAKVDATPSKRPNPSSAHAPSTPAKRPYPLAHAPSTPAKEFSVASRSPSSSNNMSKSNRKTNASYQGLRATKSDVHKKIQGGEKPKERMTKRPSVAARKAKAKLGKESDLPKQAGMKRKLDSRTPDSTLRNRKVKKNR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1699 519 Gene3D - 189 293 IPR012677 -
Gso9g1699 519 SUPERFAMILY RNA-binding domain, RBD 185 293 IPR035979 GO:0003676
Gso9g1699 519 CDD RRM2_RBM34 305 381 IPR034221 -
Gso9g1699 519 MobiDBLite consensus disorder prediction 40 147 - -
Gso9g1699 519 MobiDBLite consensus disorder prediction 75 96 - -
Gso9g1699 519 PANTHER RNA-BINDING PROTEIN 34 46 517 - -
Gso9g1699 519 MobiDBLite consensus disorder prediction 108 147 - -
Gso9g1699 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 385 IPR000504 GO:0003723
Gso9g1699 519 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g1699 519 MobiDBLite consensus disorder prediction 382 519 - -
Gso9g1699 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 237 IPR000504 GO:0003723
Gso9g1699 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 378 IPR000504 GO:0003723
Gso9g1699 519 MobiDBLite consensus disorder prediction 421 450 - -
Gso9g1699 519 MobiDBLite consensus disorder prediction 55 74 - -
Gso9g1699 519 SMART rrm1_1 194 283 IPR000504 GO:0003723
Gso9g1699 519 SMART rrm1_1 305 381 IPR000504 GO:0003723
Gso9g1699 519 MobiDBLite consensus disorder prediction 452 513 - -
Gso9g1699 519 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 517 - -
Gso9g1699 519 Gene3D - 294 391 IPR012677 -
Gso9g1699 519 CDD RRM1_RBM34 193 283 IPR034220 -
Gso9g1699 519 SUPERFAMILY RNA-binding domain, RBD 299 394 IPR035979 GO:0003676
Gso9g1699 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1699 Gso-Chr9 41396594 41400398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1699 195 384 Eukaryotic Initiation Factors Gene Family AT1G22760 25.521 3.43e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1699 K14837 - gmx:100809622 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0147 1 1659627 1664409 Gso9g1699 9 41396594 41400398 GST