Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1696 ATGGCTTCTCTAGGCAACCCAAAAACTTGGGTTCCATACATGAACAACAAAGACTGTTCACAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGCTATGTAATCTACCCTCCTCCTCCTCCTCCCTTTGAATTTCCCAGTGATGATTCAAGTCCAAATTTCTCACCTCTAGTTATTGCAGTCATTGGAGTCTTAGCCAGTGCTTTTCTTCTAGTGAGCTACTACACCATAATATCCAAGTACTGTGGCAACAGAGAATCTTCACAAAGCGAAGAGCACGAAGAAAACGTTGAATTGGAAGAAGATGATCACAACCCTTCACACCACGAGCCTTGGCATGCTTCAACAATTGGCTTGGATGAGGCTTTGATAAAGTCCATAACAGCTTGCAAGTACAAGAAAGGTGATGGATTGGTTGAGGTAACAGATTGCTCCGTTTGTCTCAGCGAGTTTCGAGATGATGAAAGTGTTAGGCTCTTGCCAAAATGCAGCCACGCTTTTCATCTTCCTTGCATTGACACATGGCTGAAATCTCACTCTAGTTGCCCTCTATGCCGTGCTAGCATATTCACCTTCAATGCTGCAGCAGCACTTCATGTTGCTGCGACGGTCACGGAACCAACTTCAAGAAACGATACCACTTCAGGAAACAGACATGCAGATGATGAAAACGTTGTTGCTGTTGCAGGGGACAGTGAATCGGATGCTGTTGAAGGAGAATCAGTCACACTCTCACATGGTGGAGCGGTTTCAAAGAGTGCATTGCGTGTTTTGAGTGATCTAGGAAACTTGAGAGGGAGGCATAGTGTAATTGAGATTAGAGATGAAGGGTATGATTCCATTAGAAGGACGGTTTCAATGGACCATTCGTTTCAAAGGGGTAGTGGTCTTTCAATTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGGGTGTTCTAATGGGGCTGGTCCTTCAAAGAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTACAGGAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAAAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAAGCAATGGGTTCTGCCTGTCTGA 1110 0.4414 MASLGNPKTWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPPFEFPSDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKYCGNRESSQSEEHEENVELEEDDHNPSHHEPWHASTIGLDEALIKSITACKYKKGDGLVEVTDCSVCLSEFRDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAAALHVAATVTEPTSRNDTTSGNRHADDENVVAVAGDSESDAVEGESVTLSHGGAVSKSALRVLSDLGNLRGRHSVIEIRDEGYDSIRRTVSMDHSFQRGSGLSIADVLHVNQEHEGCSNGAGPSKNSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGKQWVLPV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1696 369 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Gso9g1696 369 SMART ring_2 144 185 IPR001841 -
Gso9g1696 369 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 360 - -
Gso9g1696 369 MobiDBLite consensus disorder prediction 309 330 - -
Gso9g1696 369 MobiDBLite consensus disorder prediction 89 111 - -
Gso9g1696 369 Pfam Ring finger domain 143 186 IPR001841 -
Gso9g1696 369 CDD RING-H2_PA-TM-RING 143 186 - -
Gso9g1696 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 360 IPR044675 -
Gso9g1696 369 SUPERFAMILY RING/U-box 124 192 - -
Gso9g1696 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1696 Gso-Chr9 41365904 41367715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1696 1 320 C3H Transcription Factor Family AT3G03550 43.284 1.34e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1696 - - gmx:100792799 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0151 1 1693550 1695212 Gso9g1696 9 41365904 41367715 GST