Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1695 ATGGCTACTTTAGAATCAGCTCTCACTCTCTTCGCACCTCAACGGTTCTCTGCAAAAGCACCAATCTCCATCAAGCTCCATGCTTCCACCTCCCATATCTTCTCTTCCAAGTCCTTCTTCAAAACCGGAAGACTCTGCTTCCAGTTATGCTCCACTCTGCAAGAGGTAGCACCAACAGAGCAAACACTTGAGCCTATCCAACCAACAGACAACGTAAAGAAGCTCTACGTAGTTAACTTGTCTTGGTCTCTGACGGCGGCAGACATCACTGACCTCTTTGCCCAATGCGGAACCGTAACTGACGTCGAGATAATAAAGAGCAAAGATGGGAGGAGCAAGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAAGCTGCTGTTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATACGGGTAGAACTTGCAAAGAGATTAAAAAAACCTCCTTCTCTTCCACCTCCTCCAGGTCCCCGTCCTGGAGAGACACGCCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTCGCTGAAAATTTCAAAACGCCATCGTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGACGATCTGCTGGGTACGGATTTGTTTCTTTTCTTACCAGGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAATAAAGAAGCTGGAAGTCAAAATGATGAAGACCAAATTAAGGATGCTGGAAGTGAAGAAGATGAAGACCAAGGTTCTGATGCTCAACCGGAAGAATCATAA 849 0.4641 MATLESALTLFAPQRFSAKAPISIKLHASTSHIFSSKSFFKTGRLCFQLCSTLQEVAPTEQTLEPIQPTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRHVIYASNLAWKARSTHLRQVFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRLKFSEKNKEAGSQNDEDQIKDAGSEEDEDQGSDAQPEES* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1695 282 SUPERFAMILY RNA-binding domain, RBD 153 254 IPR035979 GO:0003676
Gso9g1695 282 Gene3D - 51 153 IPR012677 -
Gso9g1695 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 249 IPR000504 GO:0003723
Gso9g1695 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 243 IPR000504 GO:0003723
Gso9g1695 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 143 IPR000504 GO:0003723
Gso9g1695 282 MobiDBLite consensus disorder prediction 263 282 - -
Gso9g1695 282 SMART rrm1_1 74 146 IPR000504 GO:0003723
Gso9g1695 282 SMART rrm1_1 171 245 IPR000504 GO:0003723
Gso9g1695 282 MobiDBLite consensus disorder prediction 245 282 - -
Gso9g1695 282 MobiDBLite consensus disorder prediction 245 262 - -
Gso9g1695 282 PANTHER TRANSFORMER-2-RELATED 11 277 - -
Gso9g1695 282 SUPERFAMILY RNA-binding domain, RBD 57 162 IPR035979 GO:0003676
Gso9g1695 282 Gene3D - 154 263 IPR012677 -
Gso9g1695 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Gso9g1695 282 PANTHER 29 KDA RIBONUCLEOPROTEIN A, CHLOROPLASTIC 11 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1695 Gso-Chr9 41358078 41362185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1695 72 276 Eukaryotic Initiation Factors Gene Family AT1G49760 27.488 6.81e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1695 - - gmx:100792275 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0152 1 1698732 1702955 Gso9g1695 9 41358078 41362185 GST