Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1674 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTAGTTGGAGTAGTGCTTTGTCCACTGGGTTGAATGAGTTACTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTATCCACTTTGAATCCCTCATTTGCTGCATTTTCAACTCCACTAGACCACAGATTTGAATGCCCTTATGGAAGTGAAGCAGCATACCCTTTTGTTGATGGCTTCACATTGCCTGAGCTTGATTCTTCATACACCAGGAATGATGAGTCAGCACCCCTTTTGCCACAAGAGGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTAGGAAGTGAAAGCCAGAGCTTGGAACAAGCAAAAATTGGCTGCAAAATTGAGGAACTGACAGAGATTCCAGTCTTTAACATGGGCTTGTGTGGGGAGAAAAGGCCCAAATCAAAGAAACTAGAAGGGCAGCCATCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTAAGGTCAATAGTCCCTAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGCAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCGGATAAACCTCTTGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGACCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCACAGAGGTAGCAGAGCAGAGAAATTGTATGAGCCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAG 1002 0.4321 MELSQLGFLDELLAPRKDTSWSSALSTGLNELLLPSGWSFDSFDENQGLSTLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDNPSLEDEEFGFLGSESQSLEQAKIGCKIEELTEIPVFNMGLCGEKRPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNRINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCTEVAEQRNCMSQEEIKQALFRNAGYGGRCL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1674 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Gso9g1674 333 PANTHER - 2 333 - -
Gso9g1674 333 Gene3D - 153 224 IPR036638 GO:0046983
Gso9g1674 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 333 - -
Gso9g1674 333 SMART finulus 166 215 IPR011598 GO:0046983
Gso9g1674 333 CDD ACT_UUR-ACR-like 259 300 - -
Gso9g1674 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Gso9g1674 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1674 Gso-Chr9 41115628 41117467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1674 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.945 6.54e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g1674 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1674 - - gmx:100784145 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0174 1 1967554 1969442 Gso9g1674 9 41115628 41117467 GST