Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1660 ATGTCGAACGTGTTAGCAGGAGAAGAAAGCGAAAAAGTTGTTACCTATGGGTGGGCAGCTAGAGACACCTCGGGAATTCTCTCCCCATTCCACTTTATCAGAAGGGCAAATGGTGATAATGATATCACACTCGACATACTCTATTCTGGGATTTGCCACACCGATCTCCACATGGTGAAGAACGACTTTAGAATATCCATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGTAAGGTGACAAAGGTTGGTAGAAGAGTCACAAAATTCAGTGTTGGTGACATTGCTGGTGTGGGTGGCTCTGTGGGTTCGTGTGGCTCATGTTCGGACTGCAGCAACGGCTTCTATGTATATTGTCCAAAAATGATTTTAACCTACAGTGCACACTATTATGATGGAACAATAACCCAAGGTGGATACTCAAATAACATAGTGGTTGATCAGAACTTTGTCGTGCTAATCCCAAAATCTCTTCCATTAGATGGTGCAGCCCCGTTGCTATGTGCTGGAATCACAGTATACAGCCCAATGAAATATTATGGGCTTGCTCAGCCTGGGTTGCACTTGGGTGTGGTGGGCCTGGGAGGCCTAGGTCATGTGGCTGTCAAGTTTGCTAAGGCTTTTGGTATGCATGTCACTGTGATAAGTACATCTCCCAGCAAGAAAGAGGAAGCATTGGAAAAGCTTGGTGCTGATGAATTCTTGGTTAGTCTGGACCAGCAACAATTGCAGGATGCCAGGGGCACAATGGATGCCATTATTGACACAGTTTCAGCTAATCACTCTATCCAACCACTAATTGCTTTATTGAAAACAAGTGGAAAGTTGATTTTGGTAGGTGGACCACCCTCGCCTCTTGAGGTATTAGCTATGCCTTTGCTTTTGGGGAGAAAGATGATTGCTGGTAGTGCAGGAGGTGGGAGAGAAGAGATTCAAGAGATGATGGATTTTGCAGCAAAGCACAATATCACAGCAGATGTGGAAGTCATTCCAATGGATTACGTGAACACTGCCTTTGAGAGACTGGAAAAAAATGATGTTAAATATCGCTTTGTCATTGATGTGGCAAATACAATAAGCTGCATGTCCAATTAG 1095 0.4429 MSNVLAGEESEKVVTYGWAARDTSGILSPFHFIRRANGDNDITLDILYSGICHTDLHMVKNDFRISIYPMVPGHEIVGKVTKVGRRVTKFSVGDIAGVGGSVGSCGSCSDCSNGFYVYCPKMILTYSAHYYDGTITQGGYSNNIVVDQNFVVLIPKSLPLDGAAPLLCAGITVYSPMKYYGLAQPGLHLGVVGLGGLGHVAVKFAKAFGMHVTVISTSPSKKEEALEKLGADEFLVSLDQQQLQDARGTMDAIIDTVSANHSIQPLIALLKTSGKLILVGGPPSPLEVLAMPLLLGRKMIAGSAGGGREEIQEMMDFAAKHNITADVEVIPMDYVNTAFERLEKNDVKYRFVIDVANTISCMSN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1660 364 PANTHER ALDEHYDE REDUCTASE 1 363 - -
Gso9g1660 364 SUPERFAMILY GroES-like 27 186 IPR011032 -
Gso9g1660 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
Gso9g1660 364 Gene3D - 169 325 - -
Gso9g1660 364 Gene3D - 18 355 - -
Gso9g1660 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Gso9g1660 364 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Gso9g1660 364 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Gso9g1660 364 CDD CAD1 17 354 - -
Gso9g1660 364 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 363 - -
Gso9g1660 364 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1660 Gso-Chr9 40943474 40945883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1660 16 360 Monolignol Biosynthesis Gene Families AT4G37990 64.058 6.53e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1660 - K23232 gmx:100801089 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1660 9 40943474 40945883 Gso16g0794 16 18130708 18132414 PCT
Gso16g0794 16 18130708 18132414 Gso9g1660 9 40943474 40945883 PCT