Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1649 ATGGATGCAATCCAAACCGAGAAAATCTACGTTGCTGTTGGTAATGATGTGCAAGATGGACTTAAGACTTTGAATTGGGCTCTCAAGAAGTGGAATTCTCATCCAATTTCCATTGCTGTTCTCCATGTCACACACAATAGTACCAAGGATTATGTCTATACACCATTTGGGAAACTTCCTGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAGGATAAAATCAACAAGCTGCTTTCCAAGTATATTGCTTTTTGTGGCAAGGTGCCAGCAGAGATTCTTGAAGTTGAGAAATTTGATGAACCTATGCAAAAGCGCGTCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCATCCATGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGTGAATTGTTCATTATTTGTGGAGGGAAGCAAGTTTTCCTCAGAGGAAAAAATGATGAGAAAATCATGGAGGATGATCGCGGGGTCATGAGTGCAAGAATGAGAGATAAGGTAACTTTCAAAGATTGGTTAGACAAGTGGTTTAATGACAAAACCAACGATTCACAAGATAGAAGTACATCACTTTCCTCAACCAATTTGGAGTCCCCTCTGAACCAAAACCAGTGGGAATTTTACCTCCAGGAAATTGAAAAATACTATCAAGAATTGTTGTCTTCGAACTTGGAGGAAGGAAACTGCGTGCTAGAAAATGACGACTCACAGATTGGACCAATTGAGCCACATGTCACTGAACACAACAATTATGATATGGCCGAAGAACTGGAAAGTCGAATACGAGAAGAGGCGAGTGCAAGAGAGGAGCTAAAGAAGGAATCAGACGCAGAGAAAGAGCAAACAGTGGAGATGAAAACGGAGCTGGAAGAGAGGAAGAGGAGCCTGAGATCCCTGACGGAAGTTCAATCGGAGCTCTCAAACAGGCTTCAAATATGGACGTTGGCGAAGACGCGGGCGGAGACGCAGCTGGAGAAGGCGGTGGGGGAGAGGAGCGAGATGGTGAGGGAGATAGAGGAGCTGAGGCGGCAGAGGGACGTGTTCAATCGGAGGATCGAGTTTTGCAAGGAGAAGGACGCCATCGGAATGGCCGCGAGCCTCGCCGAGATGACGTGCTGCGCATTCAGGGAGTACACCGAGGAGGAGCTCCGGTTGGCGACGGATAACTTCTCCGACCGCCTCAGGTTCAAGTCCGGCGGGGATTGGACTAATGTGTATAGAGGACGCTTTAACCATTCCTCTGTTGCTATCAAGATGCTTCCTTCTTTGTCACACCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATGAGGCAACCTCATCTGGTTGCCATGGTAGGCTTTTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGGGCAATGGAAGCTTACGTGACATGCTGTTTTCTAGGAGAAGAAACCGGGTCTTACGATGGCATGACCGAATACGAATAGCCACGGAAGTTTGTTCGGGTCTGGGCTTTCTCAATGCAGCTGAGTTGAGGCCCGCTATTCATTGTCATTTGAGCTCATCAAAAATCCTCTTAGACCGCAATTTGGTTGCAAAGATCACGGGCTTTGGGCTTCTTGAATGCCATGATGAGCAATGTAACGTTGAGTCAGATTTGCAAGCCATAGGGGTTTTGTTGATACATCTTCTGACGGGAAGAAATTGGGCCGGGCTCGTCGAGGAGGTGATGACAGTGGATATGGATAGGAAGGCTTTGGGTAGTGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTTGCAAGGGAACTTGCTGCCCTGGCTATGAGGTGCATGTCCATCAAAGCCAAACCCAACTCAGAACTCAGCATTGCTAGGGTTTTAGAGGAACTCAATGAGATAAGAAGAAACGGGGATGAAATAGTTGAAAGGGAAGGGCCAAAGACAATTATTGGTGGATGTATAGATAGGGCAGGTTCCAGTGATATGCCTAGTGTTTTCCTTTGCCCCATACTTCAGGAGGCAATGACAAACCCACACGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACACTGGCTGCAGTCGGGGCGTGACACATCACCAATGACAAATTTGAGGCTGAAGCACACATTCCTCACCCCTAATCACACCCTTCGTTCCCTAATTCAGGACTGGCAGACCAACAAATCAACCTAG 2262 0.462 MDAIQTEKIYVAVGNDVQDGLKTLNWALKKWNSHPISIAVLHVTHNSTKDYVYTPFGKLPARSVSEEKLQILRKDEQDKINKLLSKYIAFCGKVPAEILEVEKFDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGKQVFLRGKNDEKIMEDDRGVMSARMRDKVTFKDWLDKWFNDKTNDSQDRSTSLSSTNLESPLNQNQWEFYLQEIEKYYQELLSSNLEEGNCVLENDDSQIGPIEPHVTEHNNYDMAEELESRIREEASAREELKKESDAEKEQTVEMKTELEERKRSLRSLTEVQSELSNRLQIWTLAKTRAETQLEKAVGERSEMVREIEELRRQRDVFNRRIEFCKEKDAIGMAASLAEMTCCAFREYTEEELRLATDNFSDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDMRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKTIIGGCIDRAGSSDMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDWQTNKST* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1649 753 CDD RING-Ubox_WDSUB1_like 685 726 - -
Gso9g1649 753 SUPERFAMILY Protein kinase-like (PK-like) 398 632 IPR011009 -
Gso9g1649 753 Coils Coil 349 383 - -
Gso9g1649 753 Coils Coil 279 317 - -
Gso9g1649 753 ProSiteProfiles Protein kinase domain profile. 416 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1649 753 Gene3D Transferase(Phosphotransferase) domain 1 487 661 - -
Gso9g1649 753 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 274 - -
Gso9g1649 753 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 279 749 - -
Gso9g1649 753 PANTHER OS02G0152300 PROTEIN 279 749 - -
Gso9g1649 753 PANTHER OS02G0152300 PROTEIN 5 274 - -
Gso9g1649 753 Pfam U-box domain 682 752 IPR003613 GO:0004842|GO:0016567
Gso9g1649 753 MobiDBLite consensus disorder prediction 290 310 - -
Gso9g1649 753 Pfam Protein tyrosine and serine/threonine kinase 425 563 IPR001245 GO:0004672|GO:0006468
Gso9g1649 753 ProSiteProfiles U-box domain profile. 680 753 IPR003613 GO:0004842|GO:0016567
Gso9g1649 753 SUPERFAMILY RING/U-box 679 750 - -
Gso9g1649 753 Gene3D Phosphorylase Kinase; domain 1 388 485 - -
Gso9g1649 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 753 IPR013083 -
Gso9g1649 753 SMART Ubox_2 684 747 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1649 Gso-Chr9 40810111 40816141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1649 7 753 U-box Gene Family AT5G65500 48.753 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso9g1649 PK_Tyr_Ser-Thr 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1649 - - gmx:100797367 1473.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0201 1 2290548 2296027 Gso9g1649 9 40810111 40816141 GST