Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1629 ATGAGAAAAGTTTGGCTTCTTGTCATAGTGATGTTCTACCATGTCTTTCCTTCAAAAGGAATCAGCAATGTTTCTACAAGACCGAGTACTGTTAACATAGGGGCACTTATGTCCTTCAATTCAACCGTTGGCAGAGTGGCTAAAGTTGCTATAGAAGCTGCAGTGGATGATATAAATTCCAATGCAACGATTCTCAATGGAACCAAGCTTAATATTTCAATGCTTGACACCAAACTATCCACTGGGTTCCTAGGAATCATTGACTCATTAAGATTGATGGAGAAAGACACTGTGGCCATAATTGGTCCCCAGTTCTCAGTCATGGCTCATGTGATTTCCCATATTGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACGGATCCTACACTGACTTCACTGCAGTTCCCATATTTTGTTAGGACAACTCAGAGTGATCTGTATCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTAATAGCAATTTACATTGATGATGATCATGGAAGAAATGGGGTAGCTGCATTAGGGGACAAGCTAGCTGAGAAACGCGGTAAAATATCGTATAAAGCACCATTTAGGCCTAATAACATTACCAGGGAAGAAATAAACAATGCATTAGTAAAGATAGCTTTAATTGAATCAAGGGTAATAGTTCTTCACATATACCCTTCTTTTGGTCTACAAGTGCTTCATGTGGCTCGGTCACTAGGCATGATGGGAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCTACATTACTAGATTCAAACCCGTCATTGTTCACAACTCAAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTACACCCCCGAGTCAGAAATCAAAAGAAATTTTAGTTCTAGGTGGAACAAACTGAGCCAAAAGAAGGATCCTGAAGAGGGTCCTTTTGCATTGAACACCTTTGGCCTTTACGCCTATGACACGGTTTGGTTGCTTGCTTCTGCACTAGATGCATTTTTTAAGAGTGGTGGAACTTTGTCATTTTCAAATGATTCAAGCTTAAACATGTTAAAAGGGGACACCCTTAAACTTGATACTATGGGGGTATTTGTTGATGGAGTCATGTTGCTTGAAAAGATTTTAGAAGTGAACAGAACTGGTTTAACAGGCCAAATGATGTTTAGTCCTGATGGAAACTTGGTGCATCCATCATATGAAGTCATTAATGTGATAGGCACTGGAATTCGGAGGATCGGTTATTGGTCCGAAACCTCTGGCCTCCACACTGGGGAAACTCCCAATCATTCCAATTCCAGTGAAGGACTATTTGGTGTCATCTGGCCTGGCCAAACAACCCAAACCCCGCGAGGTTGGGTTTTCGCCAGCAATGGAAGACACTTGAGGATTGGGGTGCCACTCAGAATTAGTTACCGCGAGTTCGTGTCAAGAACTGAGGGGACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCAGCCCTCAACTTGTTGCCTTATCCTGTTCCCTACAAGTTTGTTCCATTTGGAGATGGTAAAACCAATCCATTAAATACAAAACTTCTCAACAAGATCACAGCTGGGGAGTTCGATGCTGTTGTAGGGGACATTACAATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATACATTGAGTCTGGGCTAGTTGTTGTGGCACCTATTAGGAAGATGAAATCCAGTGCTTGGGCTTTCTTGAGGCCATTCACTCCGATGATGTGGTTTGTCACGGGAATGTTTTTCTTGGCTGTTGGAGTTGTTGTGTGGATATTAGAACGTCGCTTAAACGAAGACTTTAGAGGCCCATCAAGAAGACAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTGCACATAGAGAAAAAACTGTGAGCACTCTGGGTCGCTTAGTGCTAATAATATGGCTTTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGCCTCACCTCCATCCTAACCGTGGAACAGCTCTCTTCCTCGGTTAAGGGAATCGAAAGCTTGGCAACAAGCAATGAACGCATCGGTTTCCTGAGTGGCTCCTTTGCAGAGAATTATCTGACAGAGGAGCTCAACATTCACAGATCCAGGCTTGTTCCTCTCAACTCACCATCAGAATATGAAAAGGCCTTGAAGGATGGTCCTGCTAATGGGGGTGTCACTGCAATAATAGATGAACGTGCATACATGGAGCTGTTCCTTGCAACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGTTGGGGCTTTGCATTCCCGAGAGACTCTCCCCTAGCAATTGACATGTCCACTGCCATCCTAAAACTATCAGAGAATGGTGATCTCCAGAGAATTCATGACAAATGGCTCACAAGAAGTGCATGCAGCTCAGAGGGTGCCAAACAAGGCATAGACCGACTTGAGCTAGAAAGCTTTTGGGGTCTGTTCCTACTGAGTGGCATTGCATGCTTCATTGCTCTCCTTTGCTATGTTATCAGAATGGCCTATCGTTTTAGCAGACACCCCAATAGTAACCCTGAGGGATGCTCATCATACTATACTCGTCTTAGATCATTCTTTACCTTTGTCAATGAAAGAGAAGAAGAGGAAGAAAAAAACATCATGTCAAAGAGAAAACGAACCGAAAAGGGATCTAGCAGAAGGGTGGCGCATGAAGATGGATTAATAATGGATGGCTCAAGTGTTAGTGTCCATATTGAAAACGATGCCGCCCAAGGCTAA 2793 0.43 MRKVWLLVIVMFYHVFPSKGISNVSTRPSTVNIGALMSFNSTVGRVAKVAIEAAVDDINSNATILNGTKLNISMLDTKLSTGFLGIIDSLRLMEKDTVAIIGPQFSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMAAVAEIVDHFQWRDVIAIYIDDDHGRNGVAALGDKLAEKRGKISYKAPFRPNNITREEINNALVKIALIESRVIVLHIYPSFGLQVLHVARSLGMMGSGYVWIATDWLSTLLDSNPSLFTTQAMNDIQGVITLRMYTPESEIKRNFSSRWNKLSQKKDPEEGPFALNTFGLYAYDTVWLLASALDAFFKSGGTLSFSNDSSLNMLKGDTLKLDTMGVFVDGVMLLEKILEVNRTGLTGQMMFSPDGNLVHPSYEVINVIGTGIRRIGYWSETSGLHTGETPNHSNSSEGLFGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALNLLPYPVPYKFVPFGDGKTNPLNTKLLNKITAGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLAVGVVVWILERRLNEDFRGPSRRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSNERIGFLSGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELESFWGLFLLSGIACFIALLCYVIRMAYRFSRHPNSNPEGCSSYYTRLRSFFTFVNEREEEEEKNIMSKRKRTEKGSSRRVAHEDGLIMDGSSVSVHIENDAAQG* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1629 930 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Gso9g1629 930 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Gso9g1629 930 Gene3D - 464 577 - -
Gso9g1629 930 CDD GluR_Plant 467 807 - -
Gso9g1629 930 PIRSF IGluLR_plant 1 926 IPR017103 -
Gso9g1629 930 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Gso9g1629 930 Gene3D - 578 713 - -
Gso9g1629 930 SUPERFAMILY Periplasmic binding protein-like II 442 809 - -
Gso9g1629 930 Gene3D - 725 814 - -
Gso9g1629 930 Gene3D - 147 427 - -
Gso9g1629 930 PANTHER GLUTAMATE RECEPTOR 18 927 - -
Gso9g1629 930 Gene3D - 49 402 - -
Gso9g1629 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 927 - -
Gso9g1629 930 MobiDBLite consensus disorder prediction 888 908 - -
Gso9g1629 930 Pfam Bacterial extracellular solute-binding proteins, family 3 490 808 IPR001638 -
Gso9g1629 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Gso9g1629 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Gso9g1629 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Gso9g1629 930 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Gso9g1629 930 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1629 Gso-Chr9 40620952 40626017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1629 1 902 Ion Channels AT1G42540 58.225 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1629 K05387 - gmx:100790502 1827.37