Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1628 ATGAGCAAAGTTTGGCTTCTTGTCCTTGTCATCCTCTACAGTGGTTTTCCCTCAATAGGAACCACCACTACCGATTCTACATCACCAAGTGCCGTTAACATAGGGGCAATTTTATCCTTCAACTCAACAATTGGCAAAGTGGCTAAAGTTGCTATACATGCAGCAGTGGATGACATAAATTCCAATGCAACAATTCTCAATGGAACTAAGCTTAATATAACATTGCTAGACACCAAACTATCCACTGGATTCCTAGGAATCATTGATTCATTTTTGTTGATGGAGAAAGACACTGTGGCCATAATTGGTCCACAGTACTCAGTCATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACGGATCCTACACTGACTTCACTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGTATCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTTCGTCGACGACGATCATGGAAGAAATGGGATAGCTGCCTTGGGGGACAAGCTAGCAGAGAAACGTTGTAAAATATCATATAAAGTACCATTTAAACCAGATAACATAAGCCACGAAGAAATAAACAGCGCATTAGTTAAGGTAGCTTTAATGGAATCAAGGGTAATAGTCCTTCACATATACCCTTCTTCAGGACTAGAAGTGCTCCATCATGCAGCTCAGTCACTTGGCATGATGGGAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCCACAGTACTAGATTCAGAACCATCCTTGTTCTCATCTTCAGCCATGAATGACATCCAAGGAGTTATCACCTTGCGCATGCATGCACCAGATTCAGACATGAAAAAACAATTTGTTTCTAGGTGGAAAAAACTGAGCCAAAAAGAAGATTCTAATCAGGACCCTTTTGGGGTAAATATCTTTGGTCTTTACGCCTATGACACTGTGTGGTTGCTTGCTTCAGCACTCGATTCGTTTTTTAAGAGTGGTGGAACTTTGTCATTTTCAAATGATTCAAGCCTAAACATGTTAAGAGGGGACAGCCTTAACCTTGATACTATAGGGGTCTTTGTTAATGGTAGCATGTTGCTTCAAAAGATTTTAGAAGTGAACAGAACTGGTTTAACAGGCCAAATGATGTTTAGTCCTGATGGAAACTTGGTGCATCCATCATATGAAATCATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAAACCTCGGGTCTTCACACTGGGGAAGGTCCTAATCACTCCAATTTCAGTGAGGGACTATTTGGTGTCATCTGGCCTGGCCAAACAACTCAAACCCCGCGTGGTTGGGTTTTCGCCAGCAATGGAAGACACTTGAGAATTGGGGTGCCACTCAGAATTAGTTACCGCGAGTTTGTGTCAAAAATCGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCACTGAACTTGTTGCCTTATCCGGTACCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCGTTAAATTTAGACCTTCTTCACATGATCACAACTGGTGCCTTTGATGCTGTGGTGGGGGACATTACCATTACTACAAACCGAACTAAGATAGCGGATTTTACACAGCCATATATTGAGTCTGGTCTAGTTGTTGTGGCTCCTATCAAGAAGCTGAAATCAAGTGCTTGGGCTTTCCTCACACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTGGTGGTTGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTCCTAGAAGACAATTTGTCACCATTGTCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTGAGCACCCTTGGTCGATTAGTGCTAATAATATGGCTTTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCTAGCCTCACCTCCATCCTAACCGTGGAACAACTCTCTTCCCCGGTTAAAGGAATTGAAAGCCTAGTAATAAGCAGCGACCGCATCGGTTTCCTGAGGGGTTCATTTGCTGAGAATTATCTGACAGAGGAGCTCAACATACACAGGTCCAGGCTTGTTCCTCTCAACTCGCCATCAGAATATGAAAAAGCCTTGAAGGATGGTCCTGCTAATGGCGGTGTTGCTGCAATAATAGATGAACGTGCGTATATGGAGCTCTTCCTAGCGACCAGATGTGAATTTGGTATCGTTGGTCAAGAGTTCACCAAGATGGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCTTAGCAATTGATATGTCAACTGCCATCCTAAAACTATCAGAAAATGGTGATCTGCAAAGAATTCATGACAAATGGCTAACAAGAAGTGCATGCAGCTCAGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAAAAAGCTTTTGGGGTCTGTTCCTACTGAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTATTAGAATGGCCTACCGTTTTAGCAGGGATTCCAATAGTAATAACATTGAATGCTCATCACTCTCTGCTCGTCTTCGATCGTTCCTTTCCTTTGTCAATGAAAGAGAAGGGGAAGACAAATGCTGGCCAAAGACAAGGAGAAAGGAGAAGTGCTCTTGTAGAAAGGTAGTGCATGAAGATGGATCTTTGGATGACTCAACTGTTCGTGTCCACATTGAAAATAATGTCACTGCCCAAGATTAA 2793 0.4246 MSKVWLLVLVILYSGFPSIGTTTTDSTSPSAVNIGAILSFNSTIGKVAKVAIHAAVDDINSNATILNGTKLNITLLDTKLSTGFLGIIDSFLLMEKDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMAAVAEIVDHFQWRDVIAIFVDDDHGRNGIAALGDKLAEKRCKISYKVPFKPDNISHEEINSALVKVALMESRVIVLHIYPSSGLEVLHHAAQSLGMMGSGYVWIATDWLSTVLDSEPSLFSSSAMNDIQGVITLRMHAPDSDMKKQFVSRWKKLSQKEDSNQDPFGVNIFGLYAYDTVWLLASALDSFFKSGGTLSFSNDSSLNMLRGDSLNLDTIGVFVNGSMLLQKILEVNRTGLTGQMMFSPDGNLVHPSYEIINVIGTGIRRIGYWSETSGLHTGEGPNHSNFSEGLFGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSKIEGTEMFGGYCIDVFTAALNLLPYPVPFKFIPFGDGKTNPLNLDLLHMITTGAFDAVVGDITITTNRTKIADFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGAVVWILERRINDDFRGPPRRQFVTIVWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVISSDRIGFLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFIALLCYVIRMAYRFSRDSNSNNIECSSLSARLRSFLSFVNEREGEDKCWPKTRRKEKCSCRKVVHEDGSLDDSTVRVHIENNVTAQD* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1628 930 PIRSF IGluLR_plant 1 929 IPR017103 -
Gso9g1628 930 PANTHER GLUTAMATE RECEPTOR 11 928 - -
Gso9g1628 930 Pfam Bacterial extracellular solute-binding proteins, family 3 530 810 IPR001638 -
Gso9g1628 930 Gene3D - 460 579 - -
Gso9g1628 930 SUPERFAMILY Periplasmic binding protein-like II 444 811 - -
Gso9g1628 930 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Gso9g1628 930 Gene3D - 731 816 - -
Gso9g1628 930 Gene3D - 50 404 - -
Gso9g1628 930 CDD GluR_Plant 469 809 - -
Gso9g1628 930 Gene3D - 580 713 - -
Gso9g1628 930 SUPERFAMILY Periplasmic binding protein-like I 28 460 IPR028082 -
Gso9g1628 930 Gene3D - 148 429 - -
Gso9g1628 930 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Gso9g1628 930 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Gso9g1628 930 Pfam Receptor family ligand binding region 50 414 IPR001828 -
Gso9g1628 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Gso9g1628 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Gso9g1628 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Gso9g1628 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1628 Gso-Chr9 40599933 40604499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1628 1 917 Ion Channels AT1G42540 58.316 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1628 K05387 - gmx:100789442 1845.48