Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1627 ATGGCTTTCCAAAGGGCATCTGCAACCATGATTGCAGTTTGGATTGTTGTGTTGATGGTTCTCTCCAAAGGATTATCTTCAAGTGGGGTAGTATCAGATAATTCCACAATACCTGCTTTTGTAAATATTGGGGTTCTCTATTCTTTCAATACCAGTGTTGGTAGAATGGTGAAAACTGCTGTACAAGCTGCGGTTGACGATGTAAATTTTGATCAATCTATTCTTGCTAGCACTAAGTTGAAGGCCTCACTGCAAGAAGATACCAAATACAGAGGTTTTCTGAGCATTGCCGAGGCCTTGCAGCTCATGGCAACACAAACTGTGGCTATAATCGGTCCCCAGACGTCTACAACAGCTCATGTCATATCTCATATAGCGAACGAGCTCCAAGTTCCTCTACTATCATTTACAGCCACTGACCCTACTCTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACTTTGTTAACTACTTTGGCTGGAGAGAGGTTATTGCTGTTTATGGTGATGATGACCATGGGAGGAATGGAATAGGTGCATTAGGGGATAAGCTTGCCGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGACTCCTGAGACAACCAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCCTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGCCCAAAAGTGTTAAGTGTGGCAAAGTCTCTGGGAATGATGGAAAACGGGTATGTCTGGATAACAACTACTTTTCTGTCTACTTGGCTGGATATAGGTAGTCCCCTATCTTCGGATGCAACAGATGACATGCAAGGAGTCATTACACTACGTATGTATATACCAGATTCAGAGCGCAAAAGATGGTTTTTTTCAAGGTGGAAAAACTTGACTACTGGAAAGACTGCTAATGGTTCCCAGGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTACGCTCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGGAACCAAATTACATTTTCACGTGATCCAAAGTTATCTCAACTACGTGGAGACAACATGCATCTTGATGCTGTGAAAATATTCAATGAAGGAAAGCTGTTGCGTAAATATATTTATGAGGTTAACATGACTGGTGTATCAGGTCTATTCAAGTATACATCTGATGGAAACCTTGTTAATCCTGCTTATGAAATCATCAATGTTATTGGAACAGGGACTCGGAGGGTTGGTTATTGGTCTAATTACACTGGATTATCAATTGTTCCTCCTGAAGCACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGCTTTGGCCAGGAGAAACAACCCATAGGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTGCCAAAAAGGGTTAGTTATCGAGAATTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTTTGCATTGATGTATTTCTTTCTGCTGTGAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACTGAGCTTGTCCGTCTTATCACAGCTGGTGTCTTCGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATCGAGTCTGGTTTAGTGGTAGTTGCATCAGTTAAGAAGACAGATTCCAATGCTTGGGCTTTTTTGACGCCATTTACACCAATGATGTGGACTGTCACAGCTGTCTTTTTTCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCCAAACAACAAATGGTCACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCTCACAGGGAAAACACAGTGAGCACTCTCGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGCTTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAGTAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACACGAACTTATTTAATTGAAGAAATTGGTATTGATGAATCCAGACTAGTTCCTCTGAAAACACCAGAAGAAACTACAGAGGCACTTAAGAAAGGTCCCCAGAAGGGTGGTGTTGCTGCATACGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATAGCATTGTAGGTCAAGAGTTTACAAGAAATGGTTGGGGATTTGCCTTTCCTCGAGACTCACCGTTAGCAGTTGACCTTTCAACTGCAATATTAGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAACCTGAGAAGCTTTTGGGGCCTCTATCTGGTGTGTGGGTTGGCATGTGTGCTTGCTCTCCTAATATATTTTATTCAGACCATGAGGCAGTACTCCAAGCATGGCCCAGAGGAGCTCGAATCTTCTGGCCATGGCTCAGGATCTTCGCGTTTGCGCACATTCCTTACATTCGTAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAAAAAAATGGAGGGGATATCTTACAGAAGCACAAGTGAGGTTGGATCATCCATCACCTTCAACAAAGCATATTCTCAGGCATCATTAAACAGAATTGATTCAGTTAATGAAATCTAA 2844 0.4174 MAFQRASATMIAVWIVVLMVLSKGLSSSGVVSDNSTIPAFVNIGVLYSFNTSVGRMVKTAVQAAVDDVNFDQSILASTKLKASLQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADFVNYFGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMTPETTREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIGSPLSSDATDDMQGVITLRMYIPDSERKRWFFSRWKNLTTGKTANGSQGLSTYGIFAYDTVYALAHALDAFFKQGNQITFSRDPKLSQLRGDNMHLDAVKIFNEGKLLRKYIYEVNMTGVSGLFKYTSDGNLVNPAYEIINVIGTGTRRVGYWSNYTGLSIVPPEALYSKPPNRSSASQKLLPVLWPGETTHRPRGWVFPNNGRMLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAVFFLLVGAVVWILEHRLNDDFRGPPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLISSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTPEETTEALKKGPQKGGVAAYVDERAYIELFLSSRCDYSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLRSFWGLYLVCGLACVLALLIYFIQTMRQYSKHGPEELESSGHGSGSSRLRTFLTFVDEKEEIVKSRSKRKKMEGISYRSTSEVGSSITFNKAYSQASLNRIDSVNEI* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1627 947 Pfam Receptor family ligand binding region 57 419 IPR001828 -
Gso9g1627 947 Gene3D - 480 591 - -
Gso9g1627 947 PRINTS Metabotropic glutamate GPCR signature 110 136 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso9g1627 947 PRINTS Metabotropic glutamate GPCR signature 142 161 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso9g1627 947 PRINTS Metabotropic glutamate GPCR signature 161 177 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso9g1627 947 PRINTS Metabotropic glutamate GPCR signature 177 194 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gso9g1627 947 PANTHER GLUTAMATE RECEPTOR 16 939 - -
Gso9g1627 947 SUPERFAMILY Periplasmic binding protein-like II 456 823 - -
Gso9g1627 947 CDD PBP1_GABAb_receptor_plant 42 438 IPR044440 -
Gso9g1627 947 CDD GluR_Plant 479 821 - -
Gso9g1627 947 Gene3D - 157 434 - -
Gso9g1627 947 SMART GluR_14 482 823 IPR001320 GO:0015276|GO:0016020
Gso9g1627 947 Gene3D - 592 719 - -
Gso9g1627 947 Pfam Bacterial extracellular solute-binding proteins, family 3 538 821 IPR001638 -
Gso9g1627 947 Pfam Ligand-gated ion channel 822 854 IPR001320 GO:0015276|GO:0016020
Gso9g1627 947 Gene3D - 768 828 - -
Gso9g1627 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 939 - -
Gso9g1627 947 PIRSF IGluLR_plant 6 945 IPR017103 -
Gso9g1627 947 SUPERFAMILY Periplasmic binding protein-like I 38 473 IPR028082 -
Gso9g1627 947 Gene3D - 59 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1627 Gso-Chr9 40591005 40596107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1627 14 923 Ion Channels AT3G51480 58.488 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1627 K05387 - gmx:100788917 1830.45