Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1622 ATGACACGCGGGCTGAGACTCCTCCAATCCGCGGCAGCGCCACCGCCGGAGGCCGTGGCGGCCGCTGTCGAGTCCGACTTTGTCGTGATCTTGGCGGCGCTCCTCTGCGCCCTCATATGCGTGGTAGGCCTCGTCGCCATCGCGCGCTGCGCCTGGCTCCGCCGGGGAACTGCTGGAAGCTCCGCCGCCGGAGCCGTATCATCGCCGGCGACGGCGAACAAGGGCCTCAAGAAGAAGGTGGTGAATTCGCTGCCGAAGTTCACCTACGCCGACGACGGCGACCGGCGCAAGTGGTCGGAGTGCGCGATTTGCCTGACTGAGTTCGGCGCCGGCGACGAGGTCCGGGTGCTGCCGCAGTGCGGCCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTAGCGTCGCACTCATCGTGCCCCTCGTGCCGCGCGCCCTTCGCTGTCGTCGCACGCTGCCAGAAGTGCGGCCACTTTCCGGCGGTTGCATCCGCCTCCGCCGCATCGGAGTCCAAGGCCGTCGGTTGCGACAATGCCGCCGTTAGCGCTGCGAATGCTAACCGTAATAATGTTATTATTACGAATGGGTTTAGTAATTACGGTTTCTTGCCATGA 612 0.652 MTRGLRLLQSAAAPPPEAVAAAVESDFVVILAALLCALICVVGLVAIARCAWLRRGTAGSSAAGAVSSPATANKGLKKKVVNSLPKFTYADDGDRRKWSECAICLTEFGAGDEVRVLPQCGHGFHVACVDTWLASHSSCPSCRAPFAVVARCQKCGHFPAVASASAASESKAVGCDNAAVSAANANRNNVIITNGFSNYGFLP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1622 203 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 193 - -
Gso9g1622 203 Pfam Ring finger domain 100 143 IPR001841 -
Gso9g1622 203 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 193 - -
Gso9g1622 203 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Gso9g1622 203 CDD RING-H2_PA-TM-RING 100 143 - -
Gso9g1622 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Gso9g1622 203 SMART ring_2 101 142 IPR001841 -
Gso9g1622 203 SUPERFAMILY RING/U-box 84 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1622 Gso-Chr9 40533386 40534538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1622 1 155 C3H Transcription Factor Family AT1G20823 61.212 3.09e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1622 - - gmx:100786769 359.377