Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1620 ATGGTGCTTGAAATCATTGATCTGACAAACTCTCCTCCATCATCACCATCCAAGTCATTGAATGAATCCGTAACCCTTACTTCCAATAAGCGAATTCAATTTGAGCATGCTCCTTTACCAATAATGGCCGACACAAATCCCAACCTAAGCCAAACCAATCAACAACAAACTACTCTATGCCCAATTCCAAGACAAACTTATGGGCCCTCTCAGATTGTTAATAGGTTCCCATCGGTTATGCAGGGTGGGGATGTTACCATACTTGATCCAATAACTGGGTCAAACACAAACCTGGTTTCACATGGAGCGAGGCTGAAAGAGCCTTGTCTCTATGAGTCTTGGACTCAGGGAGAGCATGAGTTATTTGTGAAGGGGCTAATTAAGTATGGAAAAGGGGATTGGGCCAAAATTGCAGAAGAATTTGTATGCAACAAGACTCCTCAACAAGTCCAGAGTTATGCTATTATCTTCTTCAAGAACCTACAGCAATCAGTAAGCCCACCACCACCAACATACTCATATGGCTATAGTAGCAAGAACCCAACCTACTTTGCACCTTACCCCATGTCAAGGAATTTAAACCCTATGGTGGATCCATCAGCCTCAAACTCCATGTCTATGATTGTTAACCAATCACAACAACTCTTCACACCTGTCCCAATGAATGTTCCTTTTCCCTTGGTTCCACAATATGGAGAAGCTAGCACCAGCACCAACACCATAGCGTATGGGTTCCAAACTCATACAAGTGGTGCAACTGCAGGCACTTCCATGCATGCCATTGCTAATGATAACAAAGAAATTGATTTGGAGTTGCGCCTGGGTCGAAACAACTGA 837 0.4337 MVLEIIDLTNSPPSSPSKSLNESVTLTSNKRIQFEHAPLPIMADTNPNLSQTNQQQTTLCPIPRQTYGPSQIVNRFPSVMQGGDVTILDPITGSNTNLVSHGARLKEPCLYESWTQGEHELFVKGLIKYGKGDWAKIAEEFVCNKTPQQVQSYAIIFFKNLQQSVSPPPPTYSYGYSSKNPTYFAPYPMSRNLNPMVDPSASNSMSMIVNQSQQLFTPVPMNVPFPLVPQYGEASTSTNTIAYGFQTHTSGATAGTSMHAIANDNKEIDLELRLGRNN* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1620 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 112 159 IPR006447 GO:0003677
Gso9g1620 278 Gene3D - 111 163 - -
Gso9g1620 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 162 IPR017930 -
Gso9g1620 278 CDD SANT 113 154 IPR001005 -
Gso9g1620 278 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 20 275 - -
Gso9g1620 278 ProSiteProfiles SANT domain profile. 112 162 IPR017884 -
Gso9g1620 278 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g1620 278 Pfam Myb-like DNA-binding domain 113 153 IPR001005 -
Gso9g1620 278 MobiDBLite consensus disorder prediction 8 23 - -
Gso9g1620 278 SUPERFAMILY Homeodomain-like 113 162 IPR009057 -
Gso9g1620 278 SMART sant 110 160 IPR001005 -
Gso9g1620 278 ProSiteProfiles Myb-like domain profile. 113 153 IPR001005 -
Gso9g1620 278 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 20 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1620 Gso-Chr9 40521560 40522946 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso9g1620 Myb_DNA-binding 1.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1620 - - gmx:102659381 531.561