Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1612 ATGAGTGATGCAAAAGAGAATGATGAAGCAGGGCAGAATGTACCCTTGACTGTGGAGGAAACTCAGGAGTTAGTTGAAGCACAGGTTCAACTAGAAGATTTGGCTGCTCCTGTGTCCAAAGGGGATACTTCAAATCATGTTGAAAACGGGAAGGAAGAGGTAGTGGCACCTGTGGAGGATAAAATTGTGAAACCAGAAGCAGATTCGGAGTGCATTCCACAAAAAGATGTTCTAAATAGTGAAAATACTCTTCAGCCAGTCCCCGTAATGGACAATGCTCAAGTTTTAAATAAAACAGAAGGTGAATATGCTTCAGATGTGAAGAGCAAAGCTGAAGAAACTCCGCAGTGTGATAAGAGAATCGAGAATGATGCTAATGTTTGTCAAATCAACATGGATACTGCTGAGACGACTGTGGCGGTGAATCCCAAAGCTTTTGAAGTGGCTGATAGTAAAACTTGCCTTAATGGTGACTCCAACTCCATATGCCCCAGTCATAATGAGCCTAATACACCACATGCAATTCCTACTGAAATCAATAGTGGATTAGACAATGAGAATAGGGATAATGAAAAGCAGGCTGTTGTTGCACATGCAGATAATGGACATTCGATCTCAAAGAACTTGTACTTTTTGGACCCTGATGATTCATATAATGGTAATGAGTCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAGTTATGGAGATCTGTACACAGATTGGGCGGCTATGACAAGGTTACCTCATATAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACAACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGGCATACAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTCCTCATGCTGAGCCAATAAATATTGAAAATCAGTGTGTCCAGGGTTCAGCATCATCGGGTAGGGCGCGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGGATAGGAACTCTTTGTCTACACAAAAGCGTGAAAAGCAGCTTAAAAACATCAATTTACTTAAACGCAAGAAATCATCAGACACAGTTAATGCTGTCAAAGTGGCACACAGCCAACCATCTAGACCACAATCGGACACATATGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGAGAGCCCGAGAATTCTGACAATCCATGGGGGGTGACACCTTTCAAGAAGGTTGTCAGCTTGCCTTCAAGAATTGATACTCAGCAGACGTCGGCTGTGGTGACCTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGAGAAATCAGAATAGAGAAGGCTGA 1587 0.4279 MSDAKENDEAGQNVPLTVEETQELVEAQVQLEDLAAPVSKGDTSNHVENGKEEVVAPVEDKIVKPEADSECIPQKDVLNSENTLQPVPVMDNAQVLNKTEGEYASDVKSKAEETPQCDKRIENDANVCQINMDTAETTVAVNPKAFEVADSKTCLNGDSNSICPSHNEPNTPHAIPTEINSGLDNENRDNEKQAVVAHADNGHSISKNLYFLDPDDSYNGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEELNCLKLWRSVHRLGGYDKVTSYKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHTTKGGELNVPITPHAEPINIENQCVQGSASSGRARRDAAARAMQGWHSQRLLSNGEFSDPIIKDRNSLSTQKREKQLKNINLLKRKKSSDTVNAVKVAHSQPSRPQSDTYVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPENSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPFERNQNREG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1612 528 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 424 528 IPR002068 -
Gso9g1612 528 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 18 523 IPR045147 GO:0006357
Gso9g1612 528 SUPERFAMILY ARID-like 221 329 IPR036431 GO:0003677
Gso9g1612 528 CDD ACD_sHsps-like 439 519 - -
Gso9g1612 528 Pfam ARID/BRIGHT DNA binding domain 229 313 IPR001606 GO:0003677
Gso9g1612 528 Pfam Hsp20/alpha crystallin family 441 524 IPR002068 -
Gso9g1612 528 Gene3D - 226 324 IPR036431 GO:0003677
Gso9g1612 528 SMART ARID_2 223 313 - -
Gso9g1612 528 Gene3D - 420 527 IPR008978 -
Gso9g1612 528 CDD ARID 228 313 - -
Gso9g1612 528 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 18 523 - -
Gso9g1612 528 SMART bright_3 227 318 IPR001606 GO:0003677
Gso9g1612 528 SUPERFAMILY HSP20-like chaperones 433 520 IPR008978 -
Gso9g1612 528 ProSiteProfiles ARID domain profile. 226 317 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1612 Gso-Chr9 40444061 40451763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1612 210 522 ARID Transcription Factor Family AT1G76510 60.828 2.96e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso9g1612 HSP20 1.7e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1612 - - gmx:100785730 1053.51